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View Structure Prediction Details

Protein: PTR19_ARATH
Organism: Arabidopsis thaliana
Length: 585 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTR19_ARATH.

Description E-value Query
Range
Subject
Range
gi|50540680, gi|... - gi|50540680|gb|AAT77837.1| putative peptide transporter 1 [Oryza sativa (japonica cultivar-group)], ...
gi|218193658 - gi|218193658|gb|EEC76085.1| hypothetical protein OsI_13317 [Oryza sativa Indica Group]
407.0 [0..7] [580..32]

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Predicted Domain #1
Region A:
Residues: [1-454]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVEEEVSRW EGYADWRNRA AVKGRHGGML AASFVLVVEI LENLAYLANA SNLVLYLREY  60
   61 MHMSPSKSAN DVTNFMGTAF LLALLGGFLS DAFFSTFQIF LISASIEFLG LIILTIQART 120
  121 PSLMPPSCDS PTCEEVSGSK AAMLFVGLYL VALGVGGIKG SLASHGAEQF DESTPKGRKQ 180
  181 RSTFFNYFVF CLACGALVAV TFVVWLEDNK GWEWGFGVST IAIFVSILIF LSGSRFYRNK 240
  241 IPCGSPLTTI LKVLLAASVK CCSSGSSSNA VASMSVSPSN HCVSKGKKEV ESQGELEKPR 300
  301 QEEALPPRAQ LTNSLKVLNG AADEKPVHRL LECTVQQVED VKIVLKMLPI FACTIMLNCC 360
  361 LAQLSTFSVQ QAASMNTKIG SLKIPPASLP IFPVVFIMIL APIYDHLIIP FARKATKTET 420
  421 GVTHLQRIGV GLVLSILAMA VAALVEIKRK GVAK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.045757
Match: 2gfpA
Description: No description for 2gfpA was found.

Predicted Domain #2
Region A:
Residues: [455-585]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSGLLDSKET LPVTFLWIAL QYLFLGSADL FTLAGLLEYF FTEAPSSMRS LATSLSWASL  60
   61 AMGYYLSSVI VSIVNSITGS SGNTPWLRGK SINRYKLDYF YWLMCVLSAA NFLHYLFWAM 120
  121 RYKYRSTGSR S

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.24
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle