YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11279166
Organism:	Campylobacter jejuni
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11279166.

Description	E-value	Query Range	Subject Range
gi\|167004899, gi... - gi\|87304755\|ref\|ZP_01086911.1\| transferase, hexapeptide repeat family [Campylobacter jejuni subsp. j... gi\|86153901, gi\|... - gi\|86153901\|ref\|ZP_01072104.1\| transferase, hexapeptide repeat family [Campylobacter jejuni subsp. j...	166.0	[0..1]	[182..1]
gi\|57237289, gi\|... - gi\|57237289\|ref\|YP_178302.1\| hexapaptide repeat-containing transferase [Campylobacter jejuni RM1221]...	165.0	[0..1]	[182..1]
gi\|109690979, gi... - gi\|153951954\|ref\|YP_001397458.1\| hexapaptide repeat-containing transferase [Campylobacter jejuni sub...	165.0	[0..1]	[182..1]
gi\|57015982, gi\|... - gi\|57505709\|ref\|ZP_00371635.1\| anhydrase, family 3 protein [Campylobacter upsaliensis RM3195], gi\|57...	161.0	[0..1]	[180..1]
gi\|57020163, gi\|... - gi\|57168355\|ref\|ZP_00367489.1\| carbonic anhydrase, family 3 VC0058 [Campylobacter coli RM2228], gi\|5...	158.0	[0..1]	[178..1]
gi\|21537242 - gi\|21537242\|gb\|AAM61583.1\| unknown [Arabidopsis thaliana]	155.0	[0..2]	[180..45]
gi\|228747338, gi... - gi\|229013965\|ref\|ZP_04171090.1\| Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-li... gi\|163864684, gi... - gi\|89204251\|ref\|ZP_01182829.1\| transferase hexapeptide repeat [Bacillus weihenstephanensis KBAB4], g... gi\|228613991, gi... - gi\|229169492\|ref\|ZP_04297197.1\| Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-li...	155.0	[0..1]	[179..1]
gi\|113532294, gi... - gi\|56785028\|dbj\|BAD82610.1\| putative gamma-carbonic anhydrase [Oryza sativa Japonica Group], gi\|2226...	154.0	[0..2]	[180..45]
gi\|152977121, gi... - gi\|89201246\|ref\|ZP_01179991.1\| transferase hexapeptide repeat [Bacillus cereus subsp. cytotoxis NVH ...	154.0	[0..1]	[179..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIKFKNHSP KLGQNVFVAE GAKIIGEIEI GDESSIWFNC VLRADVNFIK IGKRTNIQDL  60
   61 STVHVWHREF DEKGKLKDAG FPTIIGDDVT IGHNCVIHAC VIKNRVLIGM NAVIMDNALI 120
  121 EEDSIVGAGS VVTKGKKFPP RSLILGNPAK FVRELNDEEV SFLKQSALNY VDFKNEFLKD 180
  181 LQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1xhdA
Description:	X-ray crystal structure of putative acetyltransferase, product of BC4754 gene [Bacillus cereus]
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.59855937987599	bayes_pls_golite062009
transferase activity	1.3237300007392	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.886009567107207	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	0.876088267537604	bayes_pls_golite062009
acyltransferase activity	0.870444687691191	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: