YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124506307, gi...
Organism:	Plasmodium falciparum 3D7
Length:	648 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124506307, gi....

Description	E-value	Query Range	Subject Range
CYOE_ALCBS - Protoheme IX farnesyltransferase OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB ...	324.0	[0..309]	[598..1]
gi\|170699771, gi... - gi\|170699771\|ref\|ZP_02890804.1\| protoheme IX farnesyltransferase [Burkholderia ambifaria IOP40-10], ... COXX_BURCM - Protoheme IX farnesyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ctaB PE=3...	318.0	[0..314]	[598..12]
COXX_BURVG - Protoheme IX farnesyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ctaB PE=3 ...	317.0	[0..314]	[598..12]
COXX_BURS3 - Protoheme IX farnesyltransferase OS=Burkholderia sp. (strain 383) GN=ctaB PE=3 SV=1 COXX_BURL3 - Protoheme IX farnesyltransferase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / ...	317.0	[0..314]	[598..12]
COXX_BURCH - Protoheme IX farnesyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=ctaB PE=3 SV=1 COXX_BURCA - Protoheme IX farnesyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=ctaB PE=3 SV=1 COXX_BURCC - Protoheme IX farnesyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=ctaB PE=3 SV=1 gi\|254247136, gi... - gi\|254247136\|ref\|ZP_04940457.1\| Protoheme IX farnesyltransferase [Burkholderia cenocepacia PC184], g... COXX_BURCJ - Protoheme IX farnesyltransferase OS=Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG ...	316.0	[0..314]	[598..12]
gi\|93353067, gi\|... - gi\|94309215\|ref\|YP_582425.1\| protoheme IX farnesyltransferase [Ralstonia metallidurans CH34], gi\|933...	315.0	[0..291]	[598..1]
UBIA_PSEPF - 4-hydroxybenzoate octaprenyltransferase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ubiA PE=3 SV=1	314.0	[0..297]	[598..1]
gi\|84355832 - gi\|84355832\|ref\|ZP_00980703.1\| COG0109: Polyprenyltransferase (cytochrome oxidase assembly factor) [...	314.0	[0..319]	[598..1]
UBIA_SACD2 - 4-hydroxybenzoate octaprenyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM ...	314.0	[0..295]	[597..1]
gi\|91227493, gi\|... - gi\|91227493\|ref\|ZP_01261830.1\| 4-hydroxybenzoate octaprenyltransferase [Vibrio alginolyticus 12G01],...	314.0	[0..315]	[596..9]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKNYSLGQK CVFNKKVESY LHFDNYIINK NLNKYFVFYL PSSVIWSSSK RSVYIGKKVN  60
   61 VVLFNKNVGI VKNVGIVKNV GIVKNVGIVK NVGIVKNVGI VKNVENVKNV GNVKNVGNVE 120
  121 NVRNVKNEEY GRLTYLWKRY YCSRNIVKKG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [151-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNNSFDMDKN MDEIHVKEKI GDPTNIYLIK GDMRKYLKNG FIYRNNDEVN ENLRSQRCDD  60
   61 LKNNMNERND GHTINHSNNS LFNNYSIDYN TNLCVNNICS NVNNVETLLL CGCGVGKKKK 120
  121 RYTFNNDFIE NDGMLKKDMI IDDIISKEKY KNKIRFFCKV IL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [313-648]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYLNNYLELS KHKLTLWVTL SSTFGYFMLG GSSIVHISSL LVGVYLCSSS ANAFNQIIER  60
   61 NIDKLMKRTQ KRPLANNNPN MSVKHAEIFA ILSGLNGSFI LYFFNNPLTS FLGVFNIFLY 120
  121 TCIYTPLKRK TPYNTHVGSI VGSIPTLMGC TAIEQNLFFP EPWILFVTQF LWQFPHFYSL 180
  181 AYLYKEDYIK GKYKMFPLQD TNGLYTAKLC KPYLITLSSL PFILFFCGYT SYMYILTSIL 240
  241 PNLFIFYKFQ KIIQKPSRAN IRSFFKHSLW HIMLLLALTT YHTQIPDKNK NNDTMPVNIN 300
  301 SNEEHNKGIH VHKDSNTEYS ITKFKKKLIK YCIVFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.221849
Match:	2qi9A
Description:	No description for 2qi9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits