YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23504501, gi\|...
Organism:	Plasmodium falciparum 3D7
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23504501, gi|....

Description	E-value	Query Range	Subject Range
gi\|21591743 - gi\|21591743\|gb\|AAM64207.1\|AF516606_1 rhoptry-associated protein 3 [Plasmodium falciparum]	638.0	[0..1]	[400..1]
gi\|6683933 - gi\|6683933\|gb\|AAF23400.1\| rhoptry-associated protein 2; RAP2 [Plasmodium falciparum] gi\|23504502, gi\|... - gi\|23613040\|ref\|NP_703362.1\| rhoptry-associated protein 2 [Plasmodium falciparum 3D7], gi\|23504502\|e...	560.0	[0..1]	[399..1]
gi\|23478687 - gi\|23478687\|gb\|EAA15706.1\| RAP2, putative [Plasmodium yoelii yoelii] gi\|82539519 - gi\|82539519\|ref\|XP_724141.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	530.0	[0..1]	[395..1]
gi\|68064534 - gi\|68064534\|ref\|XP_674251.1\| rhoptry-associated protein [Plasmodium berghei strain ANKA] gi\|56492690 - gi\|56492690\|emb\|CAI03992.1\| rhoptry-associated protein, putative [Plasmodium berghei]	406.0	[0..10]	[395..3]
gi\|72388793 - gi\|72388793\|gb\|AAZ68036.1\| rhoptry-associated protein 2 [Plasmodium vivax]	369.0	[0..4]	[395..2]
gi\|56522777 - gi\|56522777\|emb\|CAH74690.1\| rhoptry-associated protein, putative [Plasmodium chabaudi chabaudi] gi\|70947428 - gi\|70947428\|ref\|XP_743330.1\| rhoptry-associated protein [Plasmodium chabaudi chabaudi]	327.0	[0..1]	[395..1]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRKFLISLF LIFLCLNNVV IGNKCKKALI DIDTKDLSLS SILRAHKPDN TTLGSWVYFF  60
   61 FNHFSNVDEA IEYLKGLNIN VLDIEDHACF ARAFSVYLLH FYAKDLKMMI RNEEHESFFK 120
  121 NKLSEINNII SGDFLSTLKH EYFFDKLPSI IVKEKDASHI VKRTDFLQDI LEKADLNNHA 180
  181 IYKNDPTKVF IFNEINFFRT FQLE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [205-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKPHIPDDQL SFMRDYALLI YLGTKENYYN SDITEYAQGN YNISKNRTRL GLKKRSKTFS  60
   61 LDDPQKNSNI FAFCEKNGKE EFFGTPDDLI SSFFSDMKAK MVKGHKRFLM EFDYAVKNRT 120
  121 YALPKVKGFR FLKQLFQRKN LKNFVGMYIN LLSTEIDFLA EDFVEMFDTT MNCYGRQHAA 180
  181 RAADHYMDMK LSNIFK