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View Structure Prediction Details

Protein: gi|24849851
Organism: Plasmodium falciparum
Length: 514 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24849851.

Description E-value Query
Range
Subject
Range
gi|82569974, gi|... - gi|86129498|ref|NP_001034381.1| pumilio homolog 2 [Gallus gallus], gi|82569974|gb|ABB83589.1| pumili...
477.0 [0..14] [512..512]
gi|20513851 - gi|20513851|gb|AAM22812.1|AF427791_3 BPM [Hordeum vulgare]
474.0 [0..5] [512..345]
gi|109000900 - gi|109000900|ref|XP_001096411.1| PREDICTED: similar to pumilio 1 isoform 2 isoform 2 [Macaca mulatta...
474.0 [0..51] [512..570]
gi|73950054 - gi|73950054|ref|XP_865269.1| PREDICTED: similar to pumilio 1 isoform 2 isoform 12 [Canis familiaris]
473.0 [0..51] [512..697]
PUM1_ARATH - Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
472.0 [0..8] [512..424]
PUM1_XENLA - Pumilio homolog 1 OS=Xenopus laevis GN=pum1 PE=1 SV=1
472.0 [0..47] [512..688]
PUM1 - pumilio homolog 1 (Drosophila)
471.0 [0..51] [512..690]

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Predicted Domain #1
Region A:
Residues: [1-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSIFLEDDA IGHVNNIDHI NDINNIGVIN NTNNINNVND VVDEFNFKDQ LKHLKNMKTC  60
   61 STSYNSMPSS NIEMLFDQEL MGNQNILFLN DPENDIFNFS RGIIKDEYYK NYYIHKENQE 120
  121 KIDYNQIYHN FENNHNFEYF KNSEHYEKSP EQVIDNKRYY ENLPEQVIIN KKDM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [175-514]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKNDEEKHNE EGQVHIDMSK VMYDIYFLCF HKNGCEYIIK KLKEDNKEEK EIILNSLLID  60
   61 TMSLCPDIYG SYVAQSIFDL KDEKYKERFT DEFLKHTSFL TLHTYGCRLI QKSLESLSDE 120
  121 YKCKIFKELQ EDLIKYICHQ NGNHVIQKCV EVLPCSYIDI IINIIEEYLP FLSSHAYGCR 180
  181 IVQRIYEIGN EQQINRLNEQ IIKKIHLIKN RYGNYVIQKC FEHSDDNIRF IITDEIVNDI 240
  241 YKLSSHKYAC NIIEKILLKK EYKYKKKIIK KIVNDISDGK DNIINICKDC YGNFMMQKLL 300
  301 TTCRKKERNF IIKTIIENLD KLKDETYGKY ILRAINNLEK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 121.0
Match: 1ib2A
Description: Pumilio 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.373576425899935 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle