YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|8248747, gi\|2...
Organism:	Plasmodium falciparum 3D7
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8248747, gi|2....

Description	E-value	Query Range	Subject Range
gi\|68073117 - gi\|68073117\|ref\|XP_678473.1\| hypothetical protein [Plasmodium berghei strain ANKA] gi\|56498955 - gi\|56498955\|emb\|CAH96025.1\| conserved hypothetical protein [Plasmodium berghei]	230.0	[0..1]	[189..1]
PTH2_MOUSE - Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2 PE=1 SV=1	230.0	[0..18]	[188..16]
gi\|62078455, gi\|... - gi\|62078455\|ref\|NP_001013882.1\| Bcl-2 inhibitor of transcription [Rattus norvegicus], gi\|54035568\|gb...	226.0	[0..18]	[188..16]
ENSPTRT00000017368 - null PTRH2 - peptidyl-tRNA hydrolase 2 gi\|190690369, gi... - gi\|190691749\|gb\|ACE87649.1\| peptidyl-tRNA hydrolase 2 protein [synthetic construct], gi\|190690369\|gb...	225.0	[0..17]	[188..15]
gi\|109114555, gi... - gi\|109114555\|ref\|XP_001109316.1\| PREDICTED: similar to Bcl-2 inhibitor of transcription isoform a is...	223.0	[0..17]	[188..15]
gi\|77735985, gi\|... - gi\|77735985\|ref\|NP_001029691.1\| Bcl-2 inhibitor of transcription [Bos taurus], gi\|60650282\|gb\|AAX313...	220.0	[0..15]	[188..13]

Back

Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDNKVINN LQYEKYDNIA LFVAFLCGLI LGLVINYYKS MKKKVIKIKE VCETFDLKYK  60
   61 TDCKMVFCVR TDIKMTKGKI CSQCCHACLS VYEKILKRNN KIKDELQQKN SLTYFDVWKK 120
  121 TGQKKIVLKI SSLEEMFEIE SKAQKENLIT SIIVDAGRTQ IEPNTETVIA IEPVPDEIVN 180
  181 KITGDLKLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	1q7sA
Description:	Crystal structure of bit1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits