YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG8_PHYIN
Organism:	Phytophthora infestans
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG8_PHYIN.

Description	E-value	Query Range	Subject Range
gi\|25989541 - gi\|25989541\|gb\|AAM77034.1\| polyprotein [Bovine viral diarrhea virus-1]	204.0	[0..3]	[115..188]
gi\|109129278 - gi\|109129278\|ref\|XP_001104154.1\| PREDICTED: similar to GABA(A) receptor-associated protein like 2 [M...	201.0	[0..3]	[115..154]
gi\|114663750 - gi\|114663750\|ref\|XP_511114.2\| PREDICTED: similar to GABARAPL2 protein [Pan troglodytes]	200.0	[0..3]	[115..111]
gi\|42552154, gi\|... - gi\|46138451\|ref\|XP_390916.1\| hypothetical protein FG10740.1 [Gibberella zeae PH-1], gi\|42552154\|gb\|E...	199.0	[0..2]	[116..71]
gi\|2072023 - gi\|2072023\|gb\|AAB53650.1\| symbiosis-related protein [Laccaria bicolor]	199.0	[0..2]	[116..14]
gi\|74272675 - gi\|74272675\|gb\|ABA01133.1\| microtubule-associated protein-related protein [Chlamydomonas incerta]	198.0	[0..2]	[115..7]
gi\|21592920 - gi\|21592920\|gb\|AAM64870.1\| putative microtubule-associated protein [Arabidopsis thaliana]	196.0	[0..1]	[115..3]
gi\|73587001 - gi\|73587001\|gb\|AAI02903.1\| GABARAPL2 protein [Bos taurus]	195.0	[0..3]	[115..37]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFKKEHPF EKRQAEAQRI RSKYPDRIPV ICEKADRSDI PDIDKKKYLV PADLTVGQFV  60
   61 YVIRKRIKLS PEKAIFIFIN NVLPPTAALM SNIYEEQKDV DGFLYITYSG ENTFGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.39794
Match:	1eo6A
Description:	Golgi-associated ATPase enhancer of 16 kD, Gate-16
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits