YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23957778, gi\|...
Organism:	Plasmodium falciparum 3D7
Length:	1319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23957778, gi|....

Description	E-value	Query Range	Subject Range
gi\|23478292 - gi\|23478292\|gb\|EAA15419.1\| hypothetical protein [Plasmodium yoelii yoelii] gi\|82538841 - gi\|82538841\|ref\|XP_723854.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	471.0	[0..1]	[1319..1]
gi\|109499816 - gi\|109499816\|ref\|XP_223500.4\| PREDICTED: similar to CG7218-PA [Rattus norvegicus]	378.0	[0..979]	[1314..313]
gi\|109073796 - gi\|109073796\|ref\|XP_001100313.1\| PREDICTED: similar to CG7218-PA isoform 1 [Macaca mulatta]	374.0	[0..979]	[1314..194]
gi\|73951817 - gi\|73951817\|ref\|XP_545933.2\| PREDICTED: similar to CG7218-PA [Canis familiaris]	372.0	[0..979]	[1314..191]
gi\|157766618 - gi\|157766618\|ref\|XP_001675652.1\| Hypothetical protein CBG05609 [Caenorhabditis briggsae AF16] gi\|187034852, gi... - gi\|39585347\|emb\|CAE61669.1\| Hypothetical protein CBG05609 [Caenorhabditis briggsae], gi\|187034852\|em...	368.0	[0..979]	[1310..251]
CE19819 - status:Confirmed UniProt:Q9U3H8 protein_id:CAB62802.1	364.0	[0..979]	[1310..260]
TAPT1_MOUSE - Transmembrane anterior posterior transformation protein 1 OS=Mus musculus GN=Tapt1 PE=1 SV=2	362.0	[0..979]	[1314..191]
gi\|23503311, gi\|... - gi\|23503311\|ref\|NP_699196.1\| hypothetical protein LOC202018 [Homo sapiens], gi\|22759976\|dbj\|BAC11022...	359.0	[0..979]	[1314..194]
gi\|114593268 - gi\|114593268\|ref\|XP_001160887.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	359.0	[0..979]	[1314..194]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRITLYDFI IDEIKGGTHY NRYYSDSDCS EEECKEDENV SKNINDNKEK NINDEYKYDF  60
   61 YKFLDHIFKA NSIPDNALDH MLNVPFFFEK LMSFSFLLCL DNILYDITFM PIQVVRSICL 120
  121 LISLFFKNAS RNIMN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFYNFKNYKF YKYAVNNYKD PKKKYKVRVI KNLNKLSYIK RKENDHMYES KYIKEKSL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [194-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DESSILYKKL SRNLFSFHYL NGSRFSMNAS HSDDIWVDTH LEKRININNN NNNEEEFNKS  60
   61 VEKQENDEHK NNICDNITCS MKKKNIGKYF LYNRKR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [290-482]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMSSYNKDLK SELLKYGHKY SVLKSREDVK LLRSKSIMLN CVNNNNDDDE EKGERKKYIN  60
   61 NIKYLKNEIK LNYYFKYKGN MINDTYYSDN IYDMEKENWT KHKKNKKKIN EIYNTTKKEK 120
  121 KNFFIHFFII LFCFGKNILQ NIKYLMNYIF IKIVYFFHIH KLYTFPIYKD ERKKKKMYTQ 180
  181 SFEMNFHNTR NKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [483-582]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDFSDIHNR RGLLKIDYEQ GGEIHRLNSV HFEDNEEHIS SNLFIKHMYK SNEVDMGKCV  60
   61 NMSNKEKTKQ NNKNMRNLLM CAKRVIGRNN KLCASKNDHI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [583-773]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTNKGENYSN EFVDNKFEAS CEQYGKDKDT KMNDPNNNMD NNMENNNDNN NDNHIIMSDV  60
   61 MNNASYCTTE KHNNCDLLNM KANDNMFNAC SHNNDDDKII KKGCHDLKYK KDNQNCNSFM 120
  121 VNEKNDDKFI NDTNKCNPFL VKSFYKDEKY KKSNDDFTKL NENNKKDSKN MKNKKNINNL 180
  181 QNMNKIKDMK K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [774-992]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLFKEHLNSL KLSFPEYSGI IRLSLILICI YIFSFVDTSR IYHYIRAQPF MKLYVVLNML  60
   61 EILERLLRSL GKDLIDNMIR TFIRIINLRS YICIIRNNYN EKSSINSNSN YINYVHNDNY 120
  121 GVNSYIYKNK DNNNELITFD NTRHINVFTN KNKDNLLNNN NNNMNYMNYM YKDSVIKNKH 180
  181 EYENGYVTNM DKDIFSNNFY MNNIRHHADS FYYQNELNS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [993-1211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNLNKNKENN VRFFNNENDK KKNNKSKISI LFPFYSVVLK FTIQYIFVLA YILIHAFMHL  60
   61 VRFLSLNIAI NSSEVPQKIL ICCTCSTMFL ILVMSNFTEI KSTVFKKFTK ISLFTIVASD 120
  121 AVERFYLFID AFLVLLKMST AYRTQNSFFS ISSWLIIILL LEVGVDWCKH SYLLKYNKLD 180
  181 SESLNKYFHL FFLPARSSDV LISRTPNKNI YYMKDSFAV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9

Region A:
Residues: [1212-1319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PCKNIFSFSH IPTRYLFFLF GLFFIYLLHV FEFRRLGYMS MPVVTLIVCS LPRLNYLSNI  60
   61 SLFSFALSIW ICLFLFKIIL SIMIVSYTIS EKKQLKNLKK PYDDISAL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits