YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7494234
Organism:	Plasmodium falciparum
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7494234.

Description	E-value	Query Range	Subject Range
gi\|82538828 - gi\|82538828\|ref\|XP_723848.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi\|23478285 - gi\|23478285\|gb\|EAA15413.1\| hypothetical protein [Plasmodium yoelii yoelii]	323.0	[0..1]	[230..1]
gi\|68076159 - gi\|68076159\|ref\|XP_679999.1\| hypothetical protein [Plasmodium berghei strain ANKA] gi\|56500862 - gi\|56500862\|emb\|CAH93881.1\| conserved hypothetical protein [Plasmodium berghei]	274.0	[0..1]	[230..1]
gi\|70944530 - gi\|70944530\|ref\|XP_742186.1\| hypothetical protein [Plasmodium chabaudi chabaudi] gi\|56521023 - gi\|56521023\|emb\|CAH75481.1\| conserved hypothetical protein [Plasmodium chabaudi chabaudi]	267.0	[0..1]	[230..1]
gi\|71029372 - gi\|71029372\|ref\|XP_764329.1\| hypothetical protein [Theileria parva strain Muguga] gi\|68351283 - gi\|68351283\|gb\|EAN32046.1\| hypothetical protein TP04_0693 [Theileria parva]	79.0	[0..1]	[222..3]
gi\|65304331 - gi\|65304331\|emb\|CAI76710.1\| hypothetical protein, conserved [Theileria annulata] gi\|84997227 - gi\|84997227\|ref\|XP_953335.1\| hypothetical protein [Theileria annulata strain Ankara]	77.0	[0..2]	[222..4]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRSKAHFLM LANLKYLELQ DLLLKRFQVF KNEEIRILKK ENMKRILYEW AKFLIKENDN  60
   61 TNITYIPQKV LQNNKVQDIL KNDIDCEWLV NKIHISNDEQ INIHSSNNFE EFKKKKDALH 120
  121 FDEYPNLFYY EYPQFPYNYY DKKKMSNFYS LIKFPYQDIL NISKNIKNMS KEEEQKKENH 180
  181 QINNNVSNNE ENKINQDIVH MNNNNVNYTD HSYVYAPCEM ETSKENYNQT QID

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits