YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124504903, gi...
Organism:	Plasmodium falciparum 3D7
Length:	836 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124504903, gi....

Description	E-value	Query Range	Subject Range
gi\|63147406, gi\|... - gi\|63147406\|gb\|AAY34176.1\| At2g20650 [Arabidopsis thaliana], gi\|42570835\|ref\|NP_973491.1\| zinc finge...	358.0	[0..470]	[835..195]
gi\|83273689 - gi\|83273689\|ref\|XP_729508.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi\|23487519 - gi\|23487519\|gb\|EAA21073.1\| hypothetical protein [Plasmodium yoelii yoelii]	348.0	[0..1]	[365..1]
gi\|44984822, gi\|... - gi\|45198793\|ref\|NP_985822.1\| AFR275Wp [Ashbya gossypii ATCC 10895], gi\|44984822\|gb\|AAS53646.1\| AFR27... gi\|44984822 - gi\|44984822\|gb\|AAS53646.1\| AFR275Wp [Ashbya gossypii ATCC 10895]	297.0	[0..450]	[834..308]
TUL1_YEAST - Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... TUL1 - Golgi-localized RING-finger ubiquitin ligase (E3), involved in ubiquitinating and sorting membrane p...	289.0	[0..451]	[834..309]
gi\|41581287 - gi\|41581287\|emb\|CAE47936.1\| possible RING finger protein [Aspergillus fumigatus] gi\|159131331 - gi\|159131331\|gb\|EDP56444.1\| RING finger ubiquitin ligase (Tul1), putative [Aspergillus fumigatus A11... gi\|66850211, gi\|... - gi\|70995642\|ref\|XP_752576.1\| RING finger ubiquitin ligase (Tul1) [Aspergillus fumigatus Af293], gi\|6...	261.0	[0..472]	[834..316]
gi\|40747037, gi\|... - gi\|67517789\|ref\|XP_658679.1\| hypothetical protein AN1075.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	261.0	[0..472]	[834..316]
gi\|83766727 - gi\|83766727\|dbj\|BAE56867.1\| unnamed protein product [Aspergillus oryzae] gi\|169768798 - gi\|169768798\|ref\|XP_001818869.1\| hypothetical protein [Aspergillus oryzae RIB40]	249.0	[0..472]	[834..316]

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Predicted Domain #1

Region A:
Residues: [1-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNIENPRD DNENEDRNNI FLYNNEISNE GSDSCNVLCL FLFFLSLFFI MIISADNNTA  60
   61 HTFSSPTNNN NNNNNNNTDN NDNSNNSNNS NINNKKNYIN NNNNHSNYNN YFDDDPSIKY 120
  121 RKNNNIYKDN INDEFLKKED NDNIMNNMLD NILIQCLHFK GAYKIRNKNN NNMSDGIFEA 180
  181 KLVTLKLALN NVTKSYIFFY FNPYDNNNTN HNIYILNDIP KQYKYLGFNG ININKENRYI 240
  241 FNGQGYNIST FCQLKNNVKK KNEAYKYAHT NIYNNNDNNN NNNNNINGVN ENCLCNYTIN 300
  301 INQYINKYES VSLREVDESY LYSLKGYILD EQEYYKNYLQ NEYIKLYKNY ISYIQKYYHT 360
  361 HYIEKENMIH FHSLGNVNEE IIKHQSKLES AKQNDKELSY VTLKKVKHES GTIPNHNTER 420
  421 EYTSNVDNND GNNKNNDGNN KNNDENNNNS DGNNNNNDGN NKYNDVNNKY NDVNNKNNDV 480
  481 NNKYNDGHNK NNNEHVTNAH YDGYIYS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.34
Match:	1dv4A
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [508-765]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNCNLLISFE GIDIDKKYIS TKVLNFSILF NIKSIIEISL FWSQIGTSGS IPGASRISLI  60
   61 SICLNSLIDI FESLLLLYEV LLSKLLLIHF ILMILLKFLL FTIMEVRYVL IVWKANHQHE 120
  121 VNEGWEHMQR KLSKLYKYYY GSIFLLILLF YYVFPFFPYI LLILYLCWLP QILLDIWRGQ 180
  181 RNSVDIKFVF ILSLCRLYLP IYIYLYPHNI FQLDNFSQLI DTSNTMFSIL IIFIVFIQCI 240
  241 YMLLQRIYGP RYFVNIDL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.15
Match:	1xmeA
Description:	Structure of Recombinant Cytochrome ba3 Oxidase from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [766-836]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPHVHNYYKT IDVNFEAGIP ECVICMYDIV LKPNKYCVTP CYHIFHEKCL QQWMDIKLEC  60
   61 PTCRGPLPNF S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.221849
Match:	1x4jA
Description:	Solution structure of RING finger in RING finger protein 38
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits