YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23613451, gi\|...
Organism:	Plasmodium falciparum 3D7
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23613451, gi|....

Description	E-value	Query Range	Subject Range
gi\|83315976 - gi\|83315976\|ref\|XP_731024.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi\|23490935 - gi\|23490935\|gb\|EAA22589.1\| hypothetical protein [Plasmodium yoelii yoelii]	200.0	[0..1]	[166..1]
gi\|56494603 - gi\|56494603\|emb\|CAI04614.1\| tubulin-specific chaperone a, putative [Plasmodium berghei] gi\|68066907 - gi\|68066907\|ref\|XP_675425.1\| tubulin-specific chaperone a [Plasmodium berghei strain ANKA]	177.0	[0..1]	[166..1]
gi\|109483017 - gi\|109483017\|ref\|XP_001068383.1\| PREDICTED: similar to tubulin cofactor a (predicted) [Rattus norveg...	123.0	[0..9]	[101..18]
gi\|25408070 - gi\|25408070\|pir\|\|B84708 probable TCP1-chaperonin cofactor A [imported] - Arabidopsis thaliana	111.0	[0..7]	[84..3]
TBCA_MOUSE - Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=1 SV=3	108.0	[0..7]	[100..5]
gi\|30585151, gi\|... - gi\|61370238\|gb\|AAX43460.1\| tubulin-specific chaperone a [synthetic construct], gi\|30585151\|gb\|AAP368...	107.0	[0..7]	[100..5]
gi\|114688094 - gi\|114688094\|ref\|XP_520997.2\| PREDICTED: similar to cofactor A protein [Pan troglodytes]	107.0	[0..7]	[100..5]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYMALELKL LKINHGAVRR LLKELIFYEE EEKELRSKLN TLKDENKGEN EIKRAKDILE  60
   61 ETVKVVPHIN SSLQKSLKKL YETVYEKFPD ILEINDKKVG ISKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1h7cA
Description:	Tubulin chaperone cofactor A
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [105-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CTEEELKELF KTNYEEFRNE INIINQTLEN VFLHIKDATL PSSKKSVISE PVLYQMEECI  60
   61 DI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits