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View Structure Prediction Details

Protein: gi|23613378, gi|...
Organism: Plasmodium falciparum 3D7
Length: 343 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23613378, gi|....

Description E-value Query
Range
Subject
Range
gi|124807160, gi... - gi|23509211|ref|NP_701879.1| rifin [Plasmodium falciparum 3D7], gi|23497053|gb|AAN36603.1|AE014852_4...
411.0 [0..1] [343..1]

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Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLHYSKILL FSLPLNILVT SSYAHNKNKP SITPHHTPIT TSRVLSECDL YMPKYDNDAD  60
   61 MKSVKGTFDR QASQRFEEYE ERIKDKRQKR KEERDKNIQE IIEKDRKDKS FAEKVEKGCL 120
  121 RCGCGLGGVA ASIGLFGGLG IYAWRSAALV TAIQKGIEAS VEAGEAAGTK AGKEFVIAAL 180
  181 QKMGIFTVGD QRLVSYFSTT DYTSALKISS DIIQKYDPSS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [221-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CFFDFSGARE TFCTWVKVKS DAAVNVERST VSTNALVEKA VGTIVTDAKT VVERAVETAT  60
   61 DEAIQRSIGV VDAKYAICQT AIIASVVAIL VIVLVMMIIY LILRYRRKKK MKKKDQYTKL 120
  121 LNE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.798 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.699 N/A N/A a.74.1 Cyclin-like
View Download 0.615 N/A N/A a.85.1 Hemocyanin, N-terminal domain
View Download 0.594 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.594 N/A N/A f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle