YRC Public Data Repository - Protein Structure Prediction

Protein:	EDF1_XENLA
Organism:	Xenopus laevis
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EDF1_XENLA.

Description	E-value	Query Range	Subject Range
gi\|109109703 - gi\|109109703\|ref\|XP_001092659.1\| PREDICTED: similar to endothelial differentiation-related factor 1 ...	141.0	[0..1]	[129..1]
gi\|77748216, gi\|... - gi\|77748216\|gb\|AAI06502.1\| MGC131240 protein [Xenopus laevis], gi\|148232343\|ref\|NP_001089760.1\| hypo...	139.0	[0..1]	[146..1]
gi\|73967496 - gi\|73967496\|ref\|XP_537793.2\| PREDICTED: similar to endothelial differentiation-related factor 1 isof...	139.0	[0..1]	[146..43]
gi\|62859835, gi\|... - gi\|89268701\|emb\|CAJ82720.1\| endothelial differentiation-related factor 1 [Xenopus tropicalis], gi\|62...	138.0	[0..1]	[147..1]
gi\|157119744, gi... - gi\|94468910\|gb\|ABF18304.1\| transcription factor MBF1 [Aedes aegypti], gi\|157119744\|ref\|XP_001659485....	138.0	[0..1]	[147..1]
EDF1_CHICK - Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE=2 SV=1	137.0	[0..1]	[146..1]
gi\|54641337, gi\|... - gi\|54641337\|gb\|EAL30087.1\| GA17985 [Drosophila pseudoobscura pseudoobscura], gi\|125977112\|ref\|XP_001... gi\|54641337\|gb\|E... - GA17985-PA [Drosophila pseudoobscura], GA17985 [Drosophila pseudoobscura pseudoobscura] gi\|195168135, gi... - gi\|195168135\|ref\|XP_002024887.1\| GL17867 [Drosophila persimilis], gi\|194108317\|gb\|EDW30360.1\| GL1786...	137.0	[0..4]	[147..2]
gi\|60832184 - gi\|60832184\|gb\|AAX37000.1\| endothelial differentiation-related factor 1 [synthetic construct]	136.0	[0..1]	[146..1]
gi\|220953732, gi... - gi\|220953732\|gb\|ACL89409.1\| mbf1-PA [synthetic construct], gi\|220943758\|gb\|ACL84422.1\| mbf1-PA [synt... gi\|190654830, gi... - gi\|194872614\|ref\|XP_001973047.1\| GG13561 [Drosophila erecta], gi\|190654830\|gb\|EDV52073.1\| GG13561 [D... gi\|194197164, gi... - gi\|195590845\|ref\|XP_002085155.1\| GD14645 [Drosophila simulans], gi\|194197164\|gb\|EDX10740.1\| GD14645 ... FBpp0294020, FBp... - The gene multiprotein bridging factor 1 is referred to in FlyBase by the symbol Dmel\mbf1 (CG4143, F...	136.0	[0..4]	[147..2]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESDWDTVT VLRKKGPTAA QAKSKQAITA AQRRGEEVET SKKWSAGQNK QHTITRNTAK  60
   61 LDRETEEL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.070581
Match:	PF08523.1
Description:	No description for PF08523.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHDRVPLEVG KVIQQGRQGK GMTQKDLATK INEKPQVIAD YECGKAIPNN QVMGKIERVI  60
   61 GLKLRGKDIG KPMDPGPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.221849
Match:	1x57A
Description:	Solution structures of the HTH domain of human EDF-1 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits