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View Structure Prediction Details

Protein: gi|241917716, gi...
Organism: Sorghum bicolor
Length: 449 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|241917716, gi....

Description E-value Query
Range
Subject
Range
COBL3_ORYSJ - COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1
COBL3_ORYSA - COBRA-like 3 protein precursor (BRITTLE CULM1-like 4 protein) - Oryza sativa (Rice)
702.0 [0..22] [449..28]
gi|30090032 - gi|30090032|gb|AAO86520.1| phytochelatin synthetase [Triticum monococcum]
682.0 [0..21] [448..26]
COBL1_ORYSJ - COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1
COBL1_ORYSA - COBRA-like 1 protein precursor (BRITTLE CULM1-like 6 protein) - Oryza sativa (Rice)
680.0 [0..8] [449..6]
gi|38194916 - gi|38194916|gb|AAR13304.1| phytochelatin synthetase-like protein [Phaseolus vulgaris]
678.0 [0..9] [444..9]
gi|38230578 - gi|38230578|gb|AAR14311.1| phytochelatin synthetase [Triticum aestivum]
669.0 [0..21] [448..26]
gi|13477083 - gi|13477083|dbj|BAB02996.1| phytochelatin synthetase-like protein [Arabidopsis thaliana]
667.0 [0..13] [445..9]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGGRSVAC CAAVLLAAAL LLSAPTTTEA YDSLDPTGNI TIKWDIMQWT PDGYVAVVTM  60
   61 YNFQQFRHIG APGWQLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNTPHC CKKDPTIVDL 120
  121 LPGTPYNMQI ANCCKAGVIN TFNQDPANAA SSFQISVGLA GTTNKTVKVP KNFTLKTPGP 180
  181 GYTCGRAIVG RPTKFWSADG RRATQALMTW NVTCTYSQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 94.187087
Match: PF04833.7
Description: No description for PF04833.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [219-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLAQKTPSCC VSLSSFYNDT IVNCPTCSCG CQNPSGSNCV NEDSPNLQAA IDGPGKWTGQ  60
   61 PLVQCTSHMC PIRIHWHVKL NYKEYWRVKI TITNFN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [315-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRMNYTQWNL VAQHPNFDNI TQLFSFNYKP LTPYGGGIND TAMFWGVKFY NDLLMQAGKL  60
   61 GNVQSELLLR KDSRTFTFDK GWAFPRRVYF NGDNCVMPSP ENYPWLPNAS PLTRQPLTLP 120
  121 LLVFWVALAA LLAYA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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