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View Structure Prediction Details

Protein: TOM1_ARATH
Organism: Arabidopsis thaliana
Length: 291 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TOM1_ARATH.

Description E-value Query
Range
Subject
Range
TOM3_ARATH - Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana GN=TOM3 PE=1 SV=2
359.0 [0..1] [291..1]

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Predicted Domain #1
Region A:
Residues: [1-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSGLMMPA EIAGILTTAI TSWWDDVNES TQWQDGIFFA LCGAYALVSA VALVQLIRIQ  60
   61 MRVPEYGWTT QKVFHLMNFV VNGVRAVLFG FHMQVFLVHP KALCWVLLDL PGLLFFSAYT 120
  121 LLVLFWAEIY HQARSLPTDK LRITYISVNV AVYLAQIGIW AYIWVHDNST VELVGKIFIA 180
  181 VVSFIAALGF LLYGGRLFFM LRRFPIESKG RRKKLHEVGS VTAICFTCFL IRCVVVAVSA 240
  241 FDKDLTLDVL DHPVLNLIYY MVVEVLPSAL VLFILRKLPP KRVSAQYHPI Q

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.04
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle