YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PME68_ARATH
Organism: Arabidopsis thaliana
Length: 362 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PME68_ARATH.

Description E-value Query
Range
Subject
Range
gi|8671350 - gi|8671350|emb|CAB95025.1| pectin methylesterase [Nicotiana tabacum]
374.0 [0..6] [361..205]

Back

Predicted Domain #1
Region A:
Residues: [1-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLTNSLNY LFSVSLLLFV SFHCLCFRFS LVAACSNSTD DQQIQHHHHR KWVGPSGHKV  60
   61 ITVSLNGHAQ FRSVQDAVDS IPKNNNKSIT IKIAPGFYRE KVVVPATKPY ITFKGAGRDV 120
  121 TAIEWHDRAS DLGANGQQLR TYQTASVTVY ANYFTARNIS FTNTAPAPLP GMQGWQAVAF 180
  181 RISGDKAFFS GCGFYGAQDT LCDDAGRHYF KECYIEGSID FIFGNGRSMY KDCELHSIAS 240
  241 RFGSIAAHGR TCPEEKTGFA FVGCRVTGTG PLYVGRAMGQ YSRIVYAYTY FDALVAHGGW 300
  301 DDWDHKSNKS KTAFFGVYNC YGPGAAATRG VSWARALDYE SAHPFIAKSF VNGRHWIAPR 360
  361 DA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.69897
Match: 1xg2A
Description: Crystal structure of the complex between pectin methylesterase and its inhibitor protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle