YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SMO11_ARATH
Organism: Arabidopsis thaliana
Length: 298 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMO11_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593012 - gi|21593012|gb|AAM64961.1| putative C-4 sterol methyl oxidase [Arabidopsis thaliana]
256.0 [0..1] [298..1]

Back

Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPYATVEEA SIALGRNLTR LETLWFDYSA TKSDYYLYCH NILFLFLVFS LVPLPLVFVE  60
   61 LARSASGLFN RYKIQPKVNY SLSDMFKCYK DVMTMFILVV GPLQLVSYPS IQMIEIRSGL 120
  121 PLPTITEMLS QL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVYFLIEDYT NYWVHRFFHS KWGYDKIHRV HHEYTAPIGY AAPYAHWAEV LLLGIPTFMG  60
   61 PAIAPGHMIT FWLWIALRQM EAIETHSGYD FPWSPTKYIP FYGGAEYHDY HHYVGGQSQS 120
  121 NFASVFTYCD YIYGTDKGYR FQKKLLEQIK ESSKKSNKHN GGIKSD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 33.267606
Match: PF04116.4
Description: No description for PF04116.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle