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View Structure Prediction Details

Protein: gi|24899669, gi|...
Organism: Arabidopsis thaliana
Length: 657 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|24899669, gi|....

Predicted Domain #1
Region A:
Residues: [1-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNASPQPE EDDEPFKRRH EDRMESAVEI ARREREERKK RMRFDRPTRV SQPAFRDQYR  60
   61 DTRVYDQSKL PQGWLDCPGF GLEIGCIIPS KVPLSESYNE HVPPGKRYSF KQVVRNQRIN 120
  121 GRKLGLVIDL TNTTRYYPTL DLKKDGIKHV KIACRGRDAV PDNVSVNTFV NEVLQFVLNQ 180
  181 KHAKKYVLVH CTHGHNRTGF MIVHYLMRSM PTMNVTQALK LFSDARPPGI YKPDYIDALY 240
  241 TFYHEIKPES VTCPPTPEWK RSAELDLNGE AVQDDDDDDS PPDPVQEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.09691
Match: 2c46A
Description: CRYSTAL STRUCTURE OF THE HUMAN RNA guanylyltransferase and 5'- phosphatase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [289-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQENVKMSND DTLGDEIPHY QEEAYRQFCY KMLMMNVGGR GFMQFPGS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [337-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPVSLDRESL QLLRQRYYYA TWKADGTRYM MLLTIDGCYL IDRSFKFRRV QMRFPCKHSR  60
   61 EGISDKVHHY TLLDGEMVID TPTGEQGEAR RRYLVYDM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2vugA
Description: No description for 2vugA was found.

Predicted Domain #4
Region A:
Residues: [435-657]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAINGESVVE RTFCERWNMF VREVIGPRAA EKLRSHCYRY DLEPFAVRMK GFWLLSTVEK  60
   61 LLKNTIPSLS HEADGLIFQG WDDPYVPRTH KGLLKWKYAE MNSVDFLYEM GEEEGRGFLF 120
  121 LHERGKKKLM EGYSVEFRDD SDPSSYNGKI VECAWDKDKK VWFSMRIRVD KTTPNDINTA 180
  181 RKVIKSINDN ITEEVLLQEI REIIRLPMYA DRIRNDSQAA RRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.221849
Match: 1p16A
Description: mRNA capping enzyme alpha subunit
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle