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View Structure Prediction Details

Protein: RS172_ARATH
Organism: Arabidopsis thaliana
Length: 140 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS172_ARATH.

Description E-value Query
Range
Subject
Range
gi|76646952 - gi|76646952|ref|XP_879148.1| PREDICTED: similar to cytoplasmic polyadenylation element binding prote...
271.0 [0..2] [134..451]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR  60
   61 IQKGPVRGI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.69897
Match: 1rq6A
Description: Solution structure of ribosomal protein S17E from Methanobacterium Thermoautotrophicum, Northeast Structural Genomics Consortium Target TT802 / Ontario Center for Structural Proteomics Target Mth0803
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [70-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLKLQEEERE RRMDFVPDES AIKTDEIKVD KETLEMLASL GMSDTSGISA VEPQQAMAPI  60
   61 AAFGGRAPRR Y

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle