YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186517875, gi...
Organism:	Arabidopsis thaliana
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186517875, gi....

Description	E-value	Query Range	Subject Range
gi\|109039192 - gi\|109039192\|ref\|XP_001085058.1\| PREDICTED: similar to Signal peptidase complex subunit 1 (Microsoma...	124.0	[0..1]	[88..296]
gi\|50754117 - gi\|50754117\|ref\|XP_414251.1\| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...	124.0	[0..1]	[86..111]
gi\|22329270 - gi\|22329270\|ref\|NP_680778.1\| signal peptidase [Arabidopsis thaliana]	123.0	[0..1]	[93..63]
gi\|72153363, gi\|... - gi\|72153363\|ref\|XP_788906.1\| PREDICTED: similar to microsomal signal peptidase subunit [Strongylocen...	122.0	[0..1]	[93..11]
SPCS1_BOVIN - Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1	120.0	[0..1]	[88..12]
gi\|73985289, gi\|... - gi\|73985289\|ref\|XP_858931.1\| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...	120.0	[0..1]	[88..12]
SPCS1_PONAB - Signal peptidase complex subunit 1 OS=Pongo abelii GN=SPCS1 PE=3 SV=1 SPCS1 - signal peptidase complex subunit 1 homolog (S. cerevisiae) ENSPTRT00000028110 - null SPCS1_PONPY - Signal peptidase complex subunit 1 - Pongo pygmaeus (Orangutan)	119.0	[0..1]	[88..12]
SP12_MOUSE, SPCS... - Signal peptidase complex subunit 1 OS=Mus musculus GN=Spcs1 PE=2 SV=2, (Q9D958) Microsomal signal pe...	118.0	[0..1]	[88..12]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN  60
   61 RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.69897
Match:	PF06645.5
Description:	No description for PF06645.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits