YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PREP1_ARATH
Organism: Arabidopsis thaliana
Length: 1080 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for PREP1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRTVSCLAS RSSSSLFFRF FRQFPRSYMS LTSSTAALRV PSRNLRRISS PSVAGRRLLL  60
   61 RRGLRIPSAA VRSVNGQFSR LSVRAVATQP APLYPDVGQD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-1080]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAEKLGFEKV SEEFISECKS KAILFKHKKT GCEVMSVSNE DENKVFGVVF RTPPKDSTGI  60
   61 PHILEHSVLC GSRKYPVKEP FVELLKGSLH TFLNAFTYPD RTCYPVASTN TKDFYNLVDV 120
  121 YLDAVFFPKC VDDAHTFQQE GWHYELNDPS EDISYKGVVF NEMKGVYSQP DNILGRIAQQ 180
  181 ALSPENTYGV DSGGDPKDIP NLTFEEFKEF HRQYYHPSNA RIWFYGDDDP VHRLRVLSEY 240
  241 LDMFEASPSP NSSKIKFQKL FSEPVRLVEK YPAGRDGDLK KKHMLCVNWL LSEKPLDLQT 300
  301 QLALGFLDHL MLGTPASPLR KILLESGLGE ALVSSGLSDE LLQPQFGIGL KGVSEENVQK 360
  361 VEELIMDTLK KLAEEGFDND AVEASMNTIE FSLRENNTGS FPRGLSLMLQ SISKWIYDMD 420
  421 PFEPLKYTEP LKALKTRIAE EGSKAVFSPL IEKLILNNSH RVTIEMQPDP EKATQEEVEE 480
  481 KNILEKVKAA MTEEDLAELA RATEELKLKQ ETPDPPEALR CVPSLNLGDI PKEPTYVPTE 540
  541 VGDINGVKVL RHDLFTNDII YTEVVFDIGS LKHELLPLVP LFCQSLLEMG TKDLTFVQLN 600
  601 QLIGRKTGGI SVYPLTSSVR GKDEPCSKII VRGKSMAGRA DDLFNLMNCL LQEVQFTDQQ 660
  661 RFKQFVSQSR ARMENRLRGS GHGIAAARMD AMLNIAGWMS EQMGGLSYLE FLHTLEKKVD 720
  721 EDWEGISSSL EEIRRSLLAR NGCIVNMTAD GKSLTNVEKS VAKFLDLLPE NPSGGLVTWD 780
  781 GRLPLRNEAI VIPTQVNYVG KAGNIYSTGY ELDGSAYVIS KHISNTWLWD RVRVSGGAYG 840
  841 GFCDFDSHSG VFSYLSYRDP NLLKTLDIYD GTGDFLRGLD VDQETLTKAI IGTIGDVDSY 900
  901 QLPDAKGYSS LLRHLLGVTD EERQRKREEI LTTSLKDFKD FAQAIDVVRD KGVAVAVASA 960
  961 EDIDAANNER SNFFEVKKAL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2fgeA
Description: No description for 2fgeA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle