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View Structure Prediction Details

Protein: DRB4_ARATH
Organism: Arabidopsis thaliana
Length: 355 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DRB4_ARATH.

Description E-value Query
Range
Subject
Range
gi|18389232 - gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
321.0 [0..1] [355..1]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE  60
   61 HAAAKIAVAS LTPQSPEGI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1o0wA
Description: RNase III endonuclease catalytic domain; RNase III, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [80-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVAYKNLLQE IAQKESSLLP FYATATSGPS HAPTFTSTVE FAGKVFSGEE AKTKKLAEMS  60
   61 AAKVAFMSIK NGNSNQTGSP TLPSERQEDV NSNVKSSPQE IHSQPSSKVV MTPDTPSKGI 120
  121 KVNEDEFPDL HDAPASNAKE INVALNEPEN PTNDGTLSAL TTDGMKMNIA SSSLPIPHNP 180
  181 TNVITLNAPA ANGIKRNIAA CSSWMPQNPT NDGSETSSCV VDESEKKKLI MGTGHLSIPT 240
  241 GQHVVCRPWN PEITLPQDAE MLFRDDKFIA YRLVKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.522879
Match: 2yt4A
Description: No description for 2yt4A was found.

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