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View Structure Prediction Details

Protein: APY4_ARATH
Organism: Arabidopsis thaliana
Length: 503 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APY4_ARATH.

Description E-value Query
Range
Subject
Range
gi|15028065 - gi|15028065|gb|AAK76563.1| putative nucleoside triphosphatase [Arabidopsis thaliana]
491.0 [0..1] [503..1]

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Predicted Domain #1
Region A:
Residues: [1-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRSNARSRS NINSDMVDPP EVQTSPGNHR SSPSTAAKPK SKRTKSIIFV IVACVTIALG  60
   61 LLFIGYSILR SGRNRRVSLH YSVIIDGGSS GTRVHVFGYR IESGKPVFDF GEENYASLKL 120
  121 SPGLSAYADN PEGVSESVTE LVEFAKKRVH KGKLKKSDIR LMATAGMRLL ELPVQEQILD 180
  181 VTRRVLRSSG FDFRDEWASV ISGSDEGVYA WVVANHALGS LGGEPLKTTG IVELGGASAQ 240
  241 VTFVSTELVP SEFSRTLAYG NVSYNLYSHS FLDFGQDAAQ EKLSESLYNS AANSTGEGIV 300
  301 PDPCIPKGYI LETNLQKDLP GFLADKGKFT ATLQAAGNFS ECRSAAFAML QEEKGKCTYK 360
  361 RCSIGSIFTP NLQGSFLATE NFFHTSKFFG LGE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 2j4rA
Description: No description for 2j4rA was found.

Predicted functions:

Term Confidence Notes
substrate-specific transporter activity 2.59764970470908 bayes_pls_golite062009
binding 1.68922494775364 bayes_pls_golite062009
protein binding 0.956664772028256 bayes_pls_golite062009
kinase activity 0.745749848855807 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.712286564783673 bayes_pls_golite062009
peptide binding 0.52147941626058 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.454381996342618 bayes_pls_golite062009
catalytic activity 0.296484721581333 bayes_pls_golite062009
carbohydrate kinase activity 0.0904842102388556 bayes_pls_golite062009
glucose binding 0.0533651875395502 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [394-503]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEWLSEMILA GKRFCGEEWS KLKVKYPTFK DENLLRYCFS SAYIISMLHD SLGVALDDER  60
   61 IKYASKAGEE DIPLDWALGA FILNTATATF DYSGKSRKIL DLSNVAKYKI 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle