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View Structure Prediction Details

Protein: AB11G_ARATH
Organism: Arabidopsis thaliana
Length: 703 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AB11G_ARATH.

Description E-value Query
Range
Subject
Range
gi|63054104 - gi|63054104|gb|AAY28856.1| white-brown complex protein 11 [Arabidopsis halleri subsp. gemmifera]
501.0 [0..10] [695..2]

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Predicted Domain #1
Region A:
Residues: [1-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT  60
   61 MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL ASRLAANAFL SGTVLLNGRK 120
  121 TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC 180
  181 ADTVIGNWHL RGISGGEKRR VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR 240
  241 DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH 300
  301 FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV 360
  361 EEISQFKGTI LDSGGSQA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.154902
Match: 1z47A
Description: Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [379-622]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFLLQTYTLT KRSFINMSRD FGYYWLRLLI YILVTVCIGT IYLNVGTSYS AILARGSCAS  60
   61 FVFGFVTFMS IGGFPSFVED MKVFQRERLN GHYGVAAFVI ANTLSATPFL IMITFISGTI 120
  121 CYFMVGLHPG FTHYLFFVLC LYASVTVVES LMMAIASIVP NFLMGIIIGA GIQGIFMLVS 180
  181 GFFRLPNDIP KPFWRYPMSY ISFHFWALQG QYQNDLRGLT FDSQGSAFKI PGEYVLENVF 240
  241 QIDL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 29.337242
Match: PF01061.15
Description: No description for PF01061.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [623-703]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRSKWINLSV ILSMIIIYRI IFFIMIKTNE DVTPWVRGYI ARRRMKQKNG TQNTTVAPDG  60
   61 LTQSPSLRNY IATRTDGARR W

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.15
Match: 4hb1A
Description: A DESIGNED FOUR HELIX BUNDLE PROTEIN.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle