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View Structure Prediction Details

Protein: gi|23297558, gi|...
Organism: Arabidopsis thaliana
Length: 246 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23297558, gi|....

Description E-value Query
Range
Subject
Range
gi|7635460, gi|1... - gi|7635460|emb|CAB88423.1| putative protein [Arabidopsis thaliana], pir||T49131 hypothetical protein...
438.0 [0..1] [246..1]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSSKTLTLL VFSAVILTVA LGGDSGGSGN TNTIYSPCSD TRIQRSDGFT FGIAFSSRPS  60
   61 FFINQTVLLS PCDRRLSLAA MNSQFSVFRP KIDEISLLSI NTSAFFPDNY 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGYMVAFAGR KYAARSIPAF IANSTFIVTS FTLVMEFQKG RLQNLYWKRD GCASCKGNQN  60
   61 FVCLNKQDCA IRTPSCKGRG GAVDCSLGIQ LAFSGTDKHL AVLNSWYEVE NLKQYSLYGL 120
  121 YSNLKSSLTN QFNNFF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.465 N/A N/A d.129.1 TATA-box binding protein-like
View Download 0.449 N/A N/A c.59.1 MurD-like peptide ligases, peptide-binding domain
View Download 0.423 N/A N/A a.74.1 Cyclin-like
View Download 0.420 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.405 N/A N/A a.1.1 Globin-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle