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View Structure Prediction Details

Protein: PCH2_ARATH
Organism: Arabidopsis thaliana
Length: 467 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCH2_ARATH.

Description E-value Query
Range
Subject
Range
gi|56474515, gi|... - gi|67484218|ref|XP_657329.1| cell division cycle protein 48 [Entamoeba histolytica HM-1:IMSS], gi|56...
329.0 [0..2] [465..299]

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Predicted Domain #1
Region A:
Residues: [1-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEDPIPLPN ASMEVSYQNP IEAATIPVQI AVAEPVATPN PPPCLHENKF LVSVEVCLKP  60
   61 SSTARLEDVQ RAVERMLENR SMSYADGLVL IPADDLFLVD NVQRICICDT EEWVKNNDVL 120
  121 LFWQVKPVVH TFQLIEEGPC EDLCADGQPA SFNEWILPAK EFDGLWESLI YESGLKQRLL 180
  181 RYAASALLFT QKGVNPNLVS WNRIILLHGP PGTGKTSLCK ALAQKLSIRC NSRYPHCQLI 240
  241 EVNAHSLFSK WFSESGKLVA KLFQKIQEMV EEDGNLVFVL IDEVESLAAA RKAALSGSEP 300
  301 SDSIRVVNAL LTQMDKLKSA PNVIILTTSN ITTAIDVAFV DRADIKAYVG PPTLHVRYEI 360
  361 LRSCVEELIS KGIISSFQGC DGLSIPSFSS LKEKLSESEV HDTNTVPWFC KQLIEAAKGC 420
  421 EGLSGRSLRK LPFLAHAALA DPYSHDPSNF LCTMIETAKR EKSEQPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.69897
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle