YRC Public Data Repository - Protein Structure Prediction

Protein:	MTPC4_ARATH
Organism:	Arabidopsis thaliana
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTPC4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|15292845 - gi\|15292845\|gb\|AAK92793.1\| unknown protein [Arabidopsis thaliana]	348.0	[0..1]	[457..1]
gi\|32479362 - gi\|32479362\|gb\|AAP83846.1\| chromosome 4 open reading frame 1 [Homo sapiens]	304.0	[0..7]	[447..86]
ZNT9_PONPY - Zinc transporter 9 - Pongo pygmaeus (Orangutan) ZNT9_PONAB - Zinc transporter 9 OS=Pongo abelii GN=SLC30A9 PE=2 SV=1	304.0	[0..7]	[447..112]
gi\|109074106 - gi\|109074106\|ref\|XP_001098524.1\| PREDICTED: similar to solute carrier family 30 (zinc transporter), ...	301.0	[0..7]	[447..110]
gi\|73974944 - gi\|73974944\|ref\|XP_539237.2\| PREDICTED: similar to solute carrier family 30 (zinc transporter), memb...	300.0	[0..28]	[447..205]
gi\|30520015, gi\|... - gi\|30520015\|ref\|NP_848766.1\| solute carrier family 30 (zinc transporter), member 9 [Mus musculus], g...	299.0	[0..7]	[447..135]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSHRILSR LLHSPRKGYI RASVGGSVHF LALFDEKDNG FVDTTHRSFS SLIRSSSHVR  60
   61 GLISTNCLNK GLGVRCSVSL DRETPLIDTY SSHRNFFTRA KQV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.045757
Match:	2enkA
Description:	No description for 2enkA was found.

Predicted Domain #2

Region A:
Residues: [104-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRIEINDQHS QRAVTTALWC NFLVFSLKFG VWWTSSSHVI MAEVVHSVAD FANQALLAYG  60
   61 LSSSRRAPDA LHPYGYSKER FVWSLISAVG IFCLGSGATI VNGVQNLWTS SPPPNMELAA 120
  121 VVIGGSFLIE GASLLVAIQS VKKGAAQEGM TIRDYIWRGH DPTSVAVMTE DGAAVAGLAI 180
  181 AAASLVAVRM TGNPIYDPIG SIVVGNLLGM VAIFLIQRNR HALIGRAMDD QDMSKVLKFL 240
  241 RNDSVVDSLY DCKSEVIGPG SFRFKAEIDF NGQMVVQNYL KRTGREEWAK MFREAAKNGD 300
  301 DSAMLNIMSN YGEEVVTALG SEVDRLEKEI QELVPGIQHV DIEAHNPTPT DPSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	2qfiA
Description:	No description for 2qfiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits