YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15242236, gi|...
Organism: Arabidopsis thaliana
Length: 586 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15242236, gi|....

Description E-value Query
Range
Subject
Range
gi|50754333 - gi|50754333|ref|XP_414335.1| PREDICTED: similar to choline dehydrogenase precursor [Gallus gallus]
478.0 [0..32] [574..44]

Back

Predicted Domain #1
Region A:
Residues: [1-586]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLQILWLFR KIFIITYIFH ASCSPDKAGY YSFMKDATLA PMFARFDYII IGGGTSGCAL  60
   61 AATLSQNASV LVLERGGAPY DNPTATDIEN FATTLSNTSP KSWSQLFISE DGVYNTRARV 120
  121 LGGGSVLNAG FYTRAGDEYV KETEWKTDEV EAAYEWVEKK VAFQPPVLGW QTAFKDGLLE 180
  181 AGEFPYNGFT YDHIYGTKIG GTIFDRAGHR HTAADLLEYA NPGNIVVYLH ASVHKILFTT 240
  241 KGRPRPKAYG VIFQDANGVL HKAELEKNSM NEVILSAGAI GSPQLLMLSG IGPAAHLAAH 300
  301 GIKPLVLDHP MVGQGMGDNP MNAIFIPSPT PVEVSLIQVV GITKFESYIE GASGVIFSYS 360
  361 WTRRFFDGVL NYLNEMQTSR TTSTTSPTLS TQSITDFFNP INPLLNATTR AGLILQKIAG 420
  421 PISRGHLELR NTNPDDNPSV RFNYYQEPED LQICVEGINT IIKVINSKAF SKFKYPDATI 480
  481 HGLLDLMLSV PTNLRPRHIT SMFNLRQFCI DTVMTIWHYH GGCQVGRVVD KNYRVLGIDS 540
  541 LRVIDGSTFL KSPGTNPQAT VMMLGRYMGQ RILQEREIYN KPDKEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 95.69897
Match: 1ju2A
Description: Hydroxynitrile lyase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
NADPH-adrenodoxin reductase activity 1.50955366150354 bayes_pls_golite062009
catalytic activity 1.03127962968326 bayes_pls_golite062009
binding 0.378658450863731 bayes_pls_golite062009
oxidoreductase activity 0.126580706871011 bayes_pls_golite062009
protein binding 0.114490259209087 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle