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View Structure Prediction Details

Protein: gi|30102468, gi|...
Organism: Arabidopsis thaliana
Length: 867 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|30102468, gi|....

Predicted Domain #1
Region A:
Residues: [1-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVAVIGSGI SGLGSAYVLA NQGVKEVVLY EKEESLGGHA KTVRFDGVDL DLGFMVFNRV  60
   61 TYPNMMEFFE NLGVEMEVSD MSFAVSLDNG KGCEWGSRNG VSGLFAQKKN VLNPYFWQMI 120
  121 REIVRFKEDV LKYIEELEGN PDIDRKETLG EFLNSRGYSE LFQQAYLVPI CGSIWSCPSD 180
  181 GVLSFSAYSV LSFCCNHHLL QIFGRPQWLT VAGRSQTYVA KVRTELERLG CRIRTSCDVK 240
  241 SVSTSENGCV TVTSGDGSKE VFDRCILAMH APDALRLLGE EVTFDESRVL GAFQYVYSDI 300
  301 YLHHDIDLMP RNQAAWSAWN FLGSTEKKVC VTYWLNILQN LGENSEPFFV TLNPDETPKK 360
  361 TLLKWTTGHP VPSVAAWTAS QELHKIQGKR NIWFCGAYQG YGFHEDGLKA GMAAARGLLG 420
  421 KETALLNNPR HMVPSLTETG ARLFVTRFLG QFI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.69897
Match: 2bxrA
Description: Human Monoamine Oxidase A in complex with Clorgyline, Crystal Forma A
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [454-739]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STGSVTILEE GGTMFTFGGK DSTCPLKSIL KIHSPQFYWK VMTQADLGLA DAYINGDFSF  60
   61 VDKESGLLNL IMILIANRDT KSNLSKKRGW WTPMFLTAGL ASAKYFLKHV SRQNTLTQAR 120
  121 RNISRHYDLS NELFGFFLDD TMTYSSAVFK SDDEDLRTAQ MRKISLLIDK ARIEKDHEVL 180
  181 EIGCGWGTLA IEVVRRTGCK YTGITLSIEQ LKYAEEKVKE AGLQDWITFE LRDYRQLSDA 240
  241 QKYDRIISCE MLEAVGHEFM EMFFSRCEAA LAENGLIVLQ FISIPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.39794
Match: 3c0kA
Description: No description for 3c0kA was found.

Predicted Domain #3
Region A:
Residues: [740-777]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERYNEYRLSS DFIKEYIFPG GCLPSLARVT TAMSSSSR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.30103
Match: 2ip2A
Description: No description for 2ip2A was found.

Predicted Domain #4
Region A:
Residues: [778-867]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LCIEHVENIG IHYYQTLRLW RKNFLARQKQ IMALGFDDKF VRTWEYYFDY CAAGFKTLTL  60
   61 GNYQLVFSRP GNVAAFADSY RGFPSAYCVT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.522879
Match: 1kp9A
Description: CmaA1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle