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View Structure Prediction Details

Protein: TL203_ARATH
Organism: Arabidopsis thaliana
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TL203_ARATH.

Description E-value Query
Range
Subject
Range
gi|20090742, gi|... - gi|20090742|ref|NP_616817.1| hypothetical protein MA1892 [Methanosarcina acetivorans C2A], gi|199157...
233.0 [0..1] [279..280]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSSLSPLP MKSLDISRSS SSVSRSPYHF QRYLLRRLQL SSRSNLEIKD SSNTREGCCS  60
   61 SAESNTWKRI LSAAMAAAVI ASSSGVPAMA ELNRFEADTR GEFGIGSAAQ YGSAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.09691
Match: 2bm4A
Description: The Structure of MfpA (Rv3361c, C2 Crystal form). The Pentapeptide Repeat Protein from Mycobacterium tuberculosis Folds as A Right- handed Quadrilateral Beta-helix.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [116-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSKTVHSNEN FRRANFTSAD MRESDFSGST FNGAYLEKAV AYKANFSGAD LSDTLMDRMV  60
   61 LNEANLTNAV LVRSVLTRSD LGGAKIEGAD FSDAVIDLLQ KQALCKYATG TNPLTGVDTR 120
  121 KSLGCGNSRR NAYGSPSSPL LSAPPQRLLG RDGFCDEKTG LCDVK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 2j8kA
Description: No description for 2j8kA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle