YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: OOPDA_ARATH
Organism: Arabidopsis thaliana
Length: 791 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OOPDA_ARATH.

Description E-value Query
Range
Subject
Range
gi|28805052, gi|... - gi|28896844|ref|NP_796449.1| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633], gi|28805052|db...
gi|28805052 - gi|28805052|dbj|BAC58333.1| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633]
716.0 [0..96] [786..1]

Back

Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMATPTSRA SLNLLRRSPK PKYFSSSSCH FRPSTFRKSY PCPIWSSSFS FCLPPPRSTT  60
   61 STSLSSSSFR PFSSPPSMSS AAAAAVESVV SDETL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-791]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSNPLLQDFD FPPFDSVDAS HVRPGIRALL QHLEAELEEL EKSVEPTWPK LVEPLEKIVD  60
   61 RLTVVWGMIN HLKAVKDTPE LRAAIEDVQP EKVKFQLRLG QSKPIYNAFK AIRESPDWSS 120
  121 LSEARQRLVE AQIKEAVLIG IALDDEKREE FNKIEQELEK LSHKFSENVL DATKKFEKLI 180
  181 TDKKEIEGLP PSALGLFAQA AVSKGHENAT AENGPWIITL DAPSYLPVMQ HAKNRALREE 240
  241 VYRAYLSRAS SGDLDNTAII DQILKLRLEK AKLLGYNNYA EVSMAMKMAT VEKAAELLEK 300
  301 LRSASWDAAV QDMEDLKSFA KNQGAAESDS MTHWDTTFWS ERLRESKYDI NEEELRPYFS 360
  361 LPKVMDGLFS LAKTLFGIDI EPADGLAPVW NNDVRFYRVK DSSGNPIAYF YFDPYSRPSE 420
  421 KRGGAWMDEV VSRSRVMAQK GSSVRLPVAH MVCNQTPPVG DKPSLMTFRE VETVFHEFGH 480
  481 ALQHMLTKQD EGLVAGIRNI EWDAVELPSQ FMENWCYHRD TLMSIAKHYE TGETLPEEVY 540
  541 KKLLAARTFR AGSFSLRQLK FASVDLELHT KYVPGGPESI YDVDQRVSVK TQVIPPLPED 600
  601 RFLCSFSHIF AGGYAAGYYS YKWAEVLSAD AFSAFEDAGL DDIKAVKETG QRFRNTILAL 660
  661 GGGKAPLKVF VEFRGREPSP EPLLRHNGLL AASASA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 155.0
Match: 2o36A
Description: No description for 2o36A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle