YRC Public Data Repository - Protein Structure Prediction

Protein:	RAR1_ARATH
Organism:	Arabidopsis thaliana
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAR1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|73987917 - gi\|73987917\|ref\|XP_533979.2\| PREDICTED: similar to cysteine and histidine-rich domain (CHORD)-contai...	285.0	[0..10]	[225..315]
CHRD1_BOVIN - Cysteine and histidine-rich domain-containing protein 1 OS=Bos taurus GN=CHORDC1 PE=2 SV=1	271.0	[0..10]	[225..3]
gi\|109108263 - gi\|109108263\|ref\|XP_001083365.1\| PREDICTED: similar to cysteine and histidine-rich domain (CHORD)-co...	270.0	[0..10]	[225..3]
gi\|114639777 - gi\|114639777\|ref\|XP_001138405.1\| PREDICTED: cysteine and histidine-rich domain (CHORD)-containing, z...	269.0	[0..10]	[225..3]
gi\|6581056, gi\|6... - gi\|6912304\|ref\|NP_036256.1\| cysteine and histidine-rich domain (CHORD)-containing, zinc binding prot...	269.0	[0..10]	[225..3]
CHRD1_MOUSE - Cysteine and histidine-rich domain-containing protein 1 OS=Mus musculus GN=Chordc1 PE=1 SV=1	267.0	[0..10]	[225..3]
CHRD1_MACFA - Cysteine and histidine-rich domain-containing protein 1 OS=Macaca fascicularis GN=CHORDC1 PE=2 SV=1	267.0	[0..10]	[225..3]
CHRD1_RAT - Cysteine and histidine-rich domain-containing protein 1 OS=Rattus norvegicus GN=Chordc1 PE=3 SV=1	267.0	[0..10]	[225..3]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF  60
   61 LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT KDSCSRCRQG FFCSDHGSQP 120
  121 KEQIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	2yrtA
Description:	No description for 2yrtA was found.

Predicted Domain #2

Region A:
Residues: [126-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTLNTPGQAE EEKIEPLAPP VQKAVIDINQ PQVCKNKGCG QTFKERDNHE TACSHHPGPA  60
   61 VFHDRLRGWK CCDVHVKEFD EFMEIPPCTK GWHSSSPDPA V

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.920819
Match:	PF04968.4
Description:	No description for PF04968.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits