YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21594393, gi\|...
Organism:	Arabidopsis thaliana
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21594393, gi|....

Description	E-value	Query Range	Subject Range
gi\|8920612, gi\|2... - gi\|8920612\|gb\|AAF81334.1\|AC007767_14 Contains similarity to a hypothetical protein T25K17.150 gi\|748...	248.0	[0..1]	[121..1]
gi\|92892594 - gi\|92892594\|gb\|ABE91312.1\| hypothetical protein MtrDRAFT_AC144430g21v1 [Medicago truncatula]	114.0	[0..12]	[118..29]
gi\|115445543, gi... - gi\|115445543\|ref\|NP_001046551.1\| Os02g0279600 [Oryza sativa (japonica cultivar-group)], gi\|113536082...	94.0	[0..24]	[113..20]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASENSRG ISGGDRTAKA VVADQISQAV NSTANLLHLM RQSSSSQAQL AKLPKNLLAK  60
   61 ASLTKATGQA LAQLPQVISS LDAHIESGLH SGVHLNTVTQ LLENMESTQL RALRQSNISP 120
  121 VVQMTSSDLQ R

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.961	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits