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View Structure Prediction Details

Protein: gi|28973403, gi|...
Organism: Arabidopsis thaliana
Length: 267 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28973403, gi|....

Description E-value Query
Range
Subject
Range
gi|76689281 - gi|76689281|ref|XP_881384.1| PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding ...
227.0 [0..3] [260..9]

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Predicted Domain #1
Region A:
Residues: [1-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL  60
   61 LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL QESTTQTKTN MDGNSRAYVS 120
  121 KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA 180
  181 VNEKVKSVDQ KLQVSDKTMA AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG 240
  241 QVAGSKTKEK FNLAVSNMSS KDTPIAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.221849
Match: 2ghpA
Description: No description for 2ghpA was found.

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle