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View Structure Prediction Details

Protein: RLF33_ARATH
Organism: Arabidopsis thaliana
Length: 116 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLF33_ARATH.

Description E-value Query
Range
Subject
Range
gi|28628203 - gi|28628203|gb|AAO27366.1| rapid alkalinization factor 1 precursor [Populus balsamifera subsp. trich...
148.0 [0..10] [115..9]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGLSTKPVA IIIAILTVHF LFAAVTSQSS GDFVPIESKC NGTIAECSLS TAEEEFEMDS  60
   61 EINRRILATT KYISYGALRR NTVPCSRRGA SYYNCRRGAQ ANPYSRGCSA ITRCRR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 41.119186
Match: PF05498.2
Description: No description for PF05498.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.274 N/A N/A a.39.1 EF-hand
View Download 0.265 N/A N/A a.28.3 Retrovirus capsid protein C-terminal domain
View Download 0.235 N/A N/A a.4.5 "Winged helix" DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle