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View Structure Prediction Details

Protein: TSM1_ARATH
Organism: Arabidopsis thaliana
Length: 233 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TSM1_ARATH.

Description E-value Query
Range
Subject
Range
CAMT2_ARATH, CAM... - Probable caffeoyl-CoA O-methyltransferase At1g67990 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltra...
186.0 [0..1] [233..1]

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Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGRLPDKGI LKSEALKQYI METTAYPREH ELLKELREAT IQRYGNLSEM GVPVDESLFL  60
   61 SMLVKIINAK NTIEIGVFTG YSLFTVALAL PEDGRITAID IDQAGYNLGL EFMKKAGVDH 120
  121 KINFIQSDAV RGLDQLLNGE KQEYDFAFVD ADKTNYVYFL EKLLKLVKVG GIIAFDNTLW 180
  181 FGTLIQKENE VPGHMRAYRE ALLEFNKILA RDPRVEIAQI SIGDGLTLCR RLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.39794
Match: 1suiA
Description: Alfalfa caffeoyl coenzyme A 3-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.25333584501255 bayes_pls_golite062009
transferase activity 0.999964866871553 bayes_pls_golite062009
methyltransferase activity 0.558878917426836 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.557560946446304 bayes_pls_golite062009
binding 0.348263200169904 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.0605581837493382 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle