YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: BASS1_ARATH
Organism: Arabidopsis thaliana
Length: 401 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BASS1_ARATH.

Description E-value Query
Range
Subject
Range
gi|218188749 - gi|218188749|gb|EEC71176.1| hypothetical protein OsI_03049 [Oryza sativa Indica Group]
BASS2_ORYSJ - Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS...
223.0 [0..34] [395..44]

Back

Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAISLSLL NGATPLKSNS LHKSRLTPLH LRTISCSRLS YSPSSREISL KTQSTVPISC  60
   61 RRSRFDFVPR CGISSNDLPT EKKKSFGEWV EFVGEAVSTA F

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.964
Match: 2gy5A
Description: No description for 2gy5A was found.

Predicted Domain #2
Region A:
Residues: [102-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIWVSLGCLL GLMRPSTFNW VTPNWTIVGL TITMLGMGMT LTLDDLRGAL SMPKELFAGF  60
   61 LLQYSVMPLS AFFVSKLLNL PPHYAAGLIL VGCCPGGTAS NIVTYIARGN VALSVLMTAA 120
  121 STVSAVIMTP LLTAKLAKQY ITVDALGLLM STLQVVLLPV LAGAFLNQYF KKLVKFVSPV 180
  181 MPPIAVGTVA ILCGYAIGQN ASAILMSGKQ VVLASCLL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 49.958607
Match: PF01758.7
Description: No description for PF01758.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [320-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HISGFLFGYL FSRILGIDVA SSRTISIEVG MQNSVLGVVL ATQHFGNPLT AVPCAVSSVC  60
   61 HSILGSVLAG IWRRSAPKQL ED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle