| Protein: | MBD2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 272 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBD2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
323.0 | [0..3] | [272..1] |
|
|
248.0 | [0..6] | [269..22] |
|
|
216.0 | [0..35] | [264..661] |
|
|
212.0 | [0..34] | [264..663] |
|
|
208.0 | [0..35] | [264..662] |
|
Region A: Residues: [1-97] |
1 11 21 31 41 51
| | | | | |
1 MSMSQSRAVQ RSSSPNEDRG ENQLVVYDLK GNDDTEEEVL PVQSQPLSSR TQCPSIGAFT 60
61 VQCASCFKWR LMPSMQKYEE IREQLLENPF FCDTARE
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.478 | a.39.1 | EF-hand |
| View | Download | 0.478 | a.39.1 | EF-hand |
| View | Download | 0.453 | a.39.1 | EF-hand |
| View | Download | 0.412 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.350 | a.118.1 | ARM repeat |
| View | Download | 0.340 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.333 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.305 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.259 | c.23.1 | CheY-like |
|
Region A: Residues: [98-221] |
1 11 21 31 41 51
| | | | | |
1 WKPDISCDVP ADIYQDGTRL WAIDKPNISR PPAGWQRLLR IRGEGGTRFA DVYYVAPSGK 60
61 KLRSTVEVQK YLNDNSEYIG EGVKLSQFSF QIPKPLQDDY VRKRPARLLD SIDNTNTPVA 120
121 KEAN
|
| Detection Method: | |
| Confidence: | 18.39794 |
| Match: | 1ub1A |
| Description: | Solution structure of the matrix attachment region-binding domain of chicken MeCP2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [222-272] |
1 11 21 31 41 51
| | | | | |
1 PLAWISPDDH ISLQLGTPTE SGLNNSHYQP SKKKKTSTLS IFGSNDELAD R
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.731 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.731 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.694 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.622 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.600 | N/A | N/A | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.585 | N/A | N/A | d.58.10 | Acylphosphatase-like |
| View | Download | 0.537 | N/A | N/A | d.253.1 | Description not found. |
| View | Download | 0.451 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.427 | N/A | N/A | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.284 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.245 | N/A | N/A | g.41.17 | Description not found. |
| View | Download | 0.237 | N/A | N/A | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.223 | N/A | N/A | b.38.1 | Sm-like ribonucleoproteins |
