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View Structure Prediction Details

Protein: gi|21593548, gi|...
Organism: Arabidopsis thaliana
Length: 497 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21593548, gi|....

Description E-value Query
Range
Subject
Range
gi|79325316, gi|... - gi|79325316|ref|NP_001031737.1| AFG1-like ATPase family protein [Arabidopsis thaliana], gi|56790192|...
334.0 [0..15] [493..11]

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Predicted Domain #1
Region A:
Residues: [1-497]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPIIRLSSL SRIRWALRNN QERYSSTFYS KSRKLLIGVN QNQALLNTNT DNSSLYSRSS  60
   61 IFRGLSAEAV EAADPATTRV TVSDVNRTGP LVEYERRISN GELMTGDICQ ISALRELQRL 120
  121 YDELVDSVDT CRLDRYNTSD KSSRSRWFWS RLMPQTSYSP VKGLYLYGGV GTGKTMLMDL 180
  181 FFDQLPCTWK KQRIHFHDFM LSVHSRLQKH KGLSDPLEVV AQEIAHDAIL LCLDEFMVTD 240
  241 VADALILNRL FGHLFSNGVI LVATSNRNPD KLYEGGLQRD LFLPFISSLK ERSVVHEIGS 300
  301 AVDYRKLTSA EQGFYFIGKD LSTLLKQKFR QLIGDNVVAR PQVVEVVMGR KLQIPLGANG 360
  361 CAYFPFEELC DRPLGAADYF GLFKKFHTLA LDEIPVFGLH NRTAAYRFVT LVDVMYENRA 420
  421 RLLCTAEANP QELLEKIITI SEAKSMGPRT SSRSRKNDVT ELCVDNELGF AKDRTISRLT 480
  481 EMNSKEYLEH HAITHNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.69897
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle