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View Structure Prediction Details

Protein: gi|15810629, gi|...
Organism: Arabidopsis thaliana
Length: 117 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15810629, gi|....

Description E-value Query
Range
Subject
Range
gi|18855056, gi|... - gi|50919532|ref|XP_470153.1| unknown protein [Oryza sativa], gi|215767564|dbj|BAG99792.1| unnamed pr...
175.0 [0..1] [112..1]
gi|8778425, gi|2... - gi|8778425|gb|AAF79433.1|AC025808_15 F18O14.29 [Arabidopsis thaliana], pir||B86328 protein F18O14.29...
162.0 [0..20] [117..18]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLMSGWDS RVRDPKSVRR CKSLTREEID TFWKTKKKNE EEEHVQAFSK LVTQEGAQSQ  60
   61 AKEKKSVDDL FENQSKSSGW WRKTYWAFLN EPREEEGRPN NYVSQFKVAH IAKIAGS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.231 a.39.1 EF-hand
View Download 0.231 a.39.1 EF-hand
View Download 0.206 d.13.1 HIT-like
View Download 0.206 d.18.1 ssDNA-binding transcriptional regulator domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle