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View Structure Prediction Details

Protein: PAP12_ARATH
Organism: Arabidopsis thaliana
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAP12_ARATH.

Description E-value Query
Range
Subject
Range
gi|113611139, gi... - gi|215767893|dbj|BAH00122.1| unnamed protein product [Oryza sativa Japonica Group], gi|115472009|ref...
461.0 [0..36] [407..20]

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Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVRFYAVE MSLPCLCPCP SSPISLSLCS PRFNLLNTTS RRLGLSRNCR TLRISCSSSS  60
   61 TVTDQTQQSS FNDAELKLID ALIGIQGRGK SASPKQLNDV ESAVKVLEGL EGIQNPTDSD 120
  121 LIEGRWRLMF TTRPGTASPI QRTFTGVDVF TVFQDVYLKA TNDPRVSNIV KFSDFIGELK 180
  181 VEAVASIKDG KRVLFRFDRA AFDLKFLPFK VPYPVPFRLL GDEAKGWLDT TYLSPSGNLR 240
  241 ISRGNKGTTF VLQKET

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 78.420216
Match: PF04755.3
Description: No description for PF04755.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [257-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPRQKLLATI SQDKGVAEAI DEFLASNSNS AEDNYELLEG SWQMIWSSQM YTDSWIENAA  60
   61 NGLMGRQIIE KDGRIKFEVN IIPAFRFSMK GKFIKSESST YDLKMDDAAI IGGAFGYPVD 120
  121 ITNNIELKIL YTDEKMRISR GFDNIIFVHI REI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle