YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: WTR16_ARATH
Organism: Arabidopsis thaliana
Length: 417 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WTR16_ARATH.

Description E-value Query
Range
Subject
Range
gi|6957732 - gi|6957732|gb|AAF32476.1| unknown protein [Arabidopsis thaliana]
213.0 [0..1] [417..1]

Back

Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR  60
   61 INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC VNNGEDEENR SSGILSGG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 2p26A
Description: No description for 2p26A was found.

Predicted Domain #2
Region A:
Residues: [119-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGTFLEWTVL ISPFFFWGTA MVAMKEVLPI TGPFFVAAFR LIPAGLLLVA FAVYKGRPLP  60
   61 EGINAWFSIA LFALVDATCF QGFLAQGLQR TSAGLGSVII DSQPLTVAVL ASFLFGESIG 120
  121 IVRAGGLLLG VAGLLLLEVP S

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 20.958607
Match: PF00892.11
Description: No description for PF00892.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [260-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTSDGNNFSL WGSGEWWMLL AAQSMAIGTV MVRWVSKYSD PIMATGWHMV IGGLPLLAIS  60
   61 VINHDPVFNG SLQDLSTNDV IALLYTSIFG SAVSYGVYFY SATKGSLTKL SSLTFLTPMF 120
  121 ASIFGYLYLN ETFSSLQLVG AAVTLVAIYL VNFPEGND

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.60206
Match: PF00892.11
Description: No description for PF00892.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle