YRC Public Data Repository - Protein Structure Prediction

Protein:	FK173_ARATH
Organism:	Arabidopsis thaliana
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FK173_ARATH.

Description	E-value	Query Range	Subject Range
gi\|53797045 - ref\|ZP_00357923.1\| COG0545: FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Chloroflexus aurantiac... gi\|222448091, gi... - gi\|222524212\|ref\|YP_002568683.1\| peptidylprolyl isomerase FKBP-type [Chloroflexus sp. Y-400-fl], gi\|... gi\|163667727, gi... - gi\|76261334\|ref\|ZP_00768948.1\| Peptidylprolyl isomerase, FKBP-type [Chloroflexus aurantiacus J-10-fl...	205.0	[0..3]	[228..11]
gi\|7025503, gi\|1... - gi\|7025503\|gb\|AAF35906.1\|AF232672_1 FK506-binding protein [Xenopus laevis], gi\|148233253\|ref\|NP_0010...	177.0	[0..21]	[234..163]
gi\|89273879 - gi\|89273879\|emb\|CAJ83930.1\| FK506 binding protein 10, 65 kDa [Xenopus tropicalis]	176.0	[0..21]	[234..174]
gi\|27532952, gi\|... - gi\|8778202\|gb\|AAF79215.1\|AF279263_1 FKBP65RS [Mus musculus], gi\|27532952\|ref\|NP_036186.1\| FK506 bind...	175.0	[0..21]	[234..172]
FKBP9_RAT - Peptidyl-prolyl cis-trans isomerase FKBP9 OS=Rattus norvegicus GN=Fkbp9 PE=2 SV=1	175.0	[0..21]	[234..172]
gi\|73976585 - gi\|73976585\|ref\|XP_532509.2\| PREDICTED: similar to FK506 binding protein 9 (Peptidyl-prolyl cis-tran...	175.0	[0..21]	[234..101]
gi\|114612726 - gi\|114612726\|ref\|XP_519033.2\| PREDICTED: similar to FK506 binding protein 9, 63 kDa isoform 5 [Pan t...	175.0	[0..21]	[234..172]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLFTATVP SHHRFVSPSQ HPKQSLLSQS LSVTFTENPQ PTAVVTLQEQ QLTDWITSPV  60
   61 TRRFGIGAGF TWAGFLAFGV VSEQMKKSRL DVFQEEDNTR GLEKQEEIIL PNGIRYYDLQ 120
  121 VGSGATPSSG YLVVFDVKGQ VHGTEQVFVD TFGGKGKSLA MVMDSRPYSK GLCQGIEHVL 180
  181 RSMKAGGKRR VIIPPSLGFG DRNVEFGQGL EIPPSATLDY IIEVDTVYCF QTIV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1fd9A
Description:	Macrophage infectivity potentiator protein (MIP)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits