YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21592911, gi\|...
Organism:	Arabidopsis thaliana
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21592911, gi|....

Description	E-value	Query Range	Subject Range
gi\|116192375, gi... - gi\|88181818\|gb\|EAQ89286.1\| hypothetical protein CHGG_05905 [Chaetomium globosum CBS 148.51], gi\|1161...	141.0	[0..1]	[114..325]
gi\|16945386, gi\|... - gi\|32419429\|ref\|XP_330158.1\| hypothetical protein ( (AL389891) related to prefoldin subunit 1 [Neuro... gi\|85117998 - gi\|85117998\|ref\|XP_965357.1\| hypothetical protein NCU02970 [Neurospora crassa OR74A]	125.0	[0..1]	[114..3]
gi\|11359663 - gi\|11359663\|pir\|\|T50987 related to prefoldin subunit 1 [imported] - Neurospora crassa	125.0	[0..1]	[120..69]
gi\|49092698, gi\|... - gi\|67526431\|ref\|XP_661277.1\| hypothetical protein AN3673.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	124.0	[0..1]	[115..3]
gi\|30678388 - gi\|30678388\|ref\|NP_178744.3\| prefoldin-related KE2 family protein [Arabidopsis thaliana]	120.0	[0..1]	[128..1]
gi\|38108882, gi\|... - gi\|39941420\|ref\|XP_360247.1\| hypothetical protein MG05621.4 [Magnaporthe grisea 70-15], gb\|EAA54830....	116.0	[0..1]	[115..3]
gi\|157755953 - gi\|157755953\|ref\|XP_001670320.1\| Hypothetical protein CBG06021 [Caenorhabditis briggsae AF16] PFD1_CAEBR - Probable prefoldin subunit 1 OS=Caenorhabditis briggsae GN=pfd-1 PE=3 SV=1	116.0	[0..1]	[116..1]
pfd-1 - status:Confirmed UniProt:Q17827 protein_id:CAA97424.1	115.0	[0..1]	[116..1]
gi\|116118512, gi... - gi\|119114638\|ref\|XP_319396.3\| ENSANGP00000012306 [Anopheles gambiae str. PEST], gi\|116118512\|gb\|EAA1...	111.0	[0..3]	[118..5]
gi\|46108990, gi\|... - gi\|46108990\|ref\|XP_381553.1\| hypothetical protein FG01377.1 [Gibberella zeae PH-1], gi\|42546110\|gb\|E...	109.0	[0..1]	[116..3]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEATRAAF MEIQASMIEL TGKLKQVQNQ MRNKEGDRKR AFLTLEELRP LPEETNTYKS  60
   61 IGRTFVLEPK TVLEGEQEQK LKDSEAAVAS LQTSKEYLEK QVAEVENNLR ELLQQEPGIA 120
  121 QQIMSMSM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.09
Match:	1fxkB
Description:	Prefoldin beta subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits