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View Structure Prediction Details

Protein: CLPT1_ARATH
Organism: Arabidopsis thaliana
Length: 238 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|71671743, gi|... - gi|71674767|ref|ZP_00672513.1| TPR repeat:Clp, N terminal [Trichodesmium erythraeum IMS101], gi|7167...
195.0 [0..3] [226..73]

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Predicted Domain #1
Region A:
Residues: [1-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASYTVSFIP LTLSNPRIFV SRQNGSPSSS SRIPLTSSLL GKKLLATQPS HRCFVPKLRC  60
   61 LTSASTVLNV PIAQPENGSS DKIPKWSARA IKSLAMGELE ARKLKYPSTG TEAILMGILV 120
  121 EGTSTVAKFL RGNGVTLFKV RDETLSLLGK SDMYFFSPEH PPLTEPAQKA IAWAIDEKNK 180
  181 SDVDGELTTA YLLLGVWSQK DSAGRQILEK LGFNEDKAKE VEKSMNEDVD LSFKKQGQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.522879
Match: 1khyA
Description: Heat shock protein F84.1 (ClpB) N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle