YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30687686, gi\|...
Organism:	Arabidopsis thaliana
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30687686, gi|....

Description	E-value	Query Range	Subject Range
gi\|134116879, gi... - gi\|50255284\|gb\|EAL18019.1\| hypothetical protein CNBK0400 [Cryptococcus neoformans var. neoformans B-... gi\|58260982, gi\|... - gi\|58260982\|ref\|XP_567901.1\| 50s ribosomal protein l36 [Cryptococcus neoformans var. neoformans JEC2...	75.0	[0..1]	[38..70]
gi\|113550146, gi... - gi\|50919313\|ref\|XP_470053.1\| putative ribosomal protein [Oryza sativa (japonica cultivar-group)], gi... gi\|218193970 - gi\|218193970\|gb\|EEC76397.1\| hypothetical protein OsI_14030 [Oryza sativa Indica Group]	75.0	[0..1]	[42..1]
orf19.8380, orf1... - orf19.760 CGDID:CAL0001889 Assembly 19, Contig19-10073 (26337, 26708) CDS, translated using codon ta... gi\|68484933, gi\|... - gi\|68485008\|ref\|XP_713570.1\| likely mitochondrial ribosomal protein L36 [Candida albicans SC5314], g...	75.0	[0..2]	[38..87]
gi\|116000253 - gi\|116000253\|emb\|CAL49933.1\| Mitochondrial/chloroplast ribosomal protein L36 (ISS) [Ostreococcus tau...	74.0	[0..1]	[54..1]
RL36_LACGA - 50S ribosomal protein L36 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131 / NCIMB... gi\|226820935 - gi\|226820935\|ref\|ZP_03810054.1\| 50S ribosomal protein L36 [Lactobacillus gasseri MV-22] gi\|227850667, gi... - gi\|227888830\|ref\|ZP_04006635.1\| 50S ribosomal protein L36 [Lactobacillus johnsonii ATCC 33200], gi\|2... gi\|238853460, gi... - gi\|238853460\|ref\|ZP_04643838.1\| ribosomal protein L36 [Lactobacillus gasseri 202-4], gi\|238833900\|gb...	73.0	[0..1]	[38..1]
gi\|227903210, gi... - gi\|227903210\|ref\|ZP_04021015.1\| 50S ribosomal protein L36 [Lactobacillus acidophilus ATCC 4796], gi\|... RL36_LACDA - 50S ribosomal protein L36 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20... gi\|33322095 - gi\|33322095\|gb\|AAQ06767.1\|AF496109_2 50s ribosomal protein L36 [Lactobacillus delbrueckii subsp. lac... RL36_LACAC - 50S ribosomal protein L36 OS=Lactobacillus acidophilus GN=rpmJ PE=3 SV=1 RL36_LACDB - 50S ribosomal protein L36 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rp... RL36_LACAC - 50S ribosomal protein L36 OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=r...	73.0	[0..1]	[38..1]
gi\|49652153, gi\|... - gi\|50405701\|ref\|XP_456489.1\| hypothetical protein DEHA0A03817g [Debaryomyces hansenii CBS767], gi\|49...	73.0	[0..2]	[38..47]
gi\|49643941\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|49643941, gi\|... - gi\|50309589\|ref\|XP_454806.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643941\|emb\|CAG9989...	72.0	[0..2]	[38..44]
gi\|88815814, gi\|... - gi\|88854653\|ref\|ZP_01129319.1\| 50S ribosomal protein L36 [marine actinobacterium PHSC20C1], gi\|88815...	72.0	[0..1]	[38..1]
RL36_STRMU - 50S ribosomal protein L36 OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=rpmJ PE... RL36_STRA5 - 50S ribosomal protein L36 OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN... RL36_STRP6 - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN... RL36_STRPG - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpmJ PE=3 SV=1 RL36_STRPQ - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=rpmJ PE=3 SV=1 RL36_STRPM - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M28 GN=rpmJ PE=3 SV=1 RL36_STRA3 - 50S ribosomal protein L36 OS=Streptococcus agalactiae serotype III (strain NEM316) GN=rpmJ PE=3 SV=1 RL36_STRE4 - 50S ribosomal protein L36 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpmJ PE=3 SV=1 gi\|15674310, gi\|... - gi\|15674310\|ref\|NP_268483.1\| 50S ribosomal protein L36 [Streptococcus pyogenes M1 GAS], gi\|13621391\|... gi\|225867688, gi... - gi\|225867688\|ref\|YP_002743636.1\| 50S ribosomal protein L36 [Streptococcus equi subsp. zooepidemicus]... gi\|251781541, gi... - gi\|251781541\|ref\|YP_002995842.1\| 50S ribosomal protein L36 [Streptococcus dysgalactiae subsp. equisi... gi\|55739783, gi\|... - gb\|AAV63424.1\| 50S ribosomal protein L36 [Streptococcus thermophilus CNRZ1066], gb\|AAV61509.1\| 50S ... gi\|228477981, gi... - gi\|228477981\|ref\|ZP_04062592.1\| ribosomal protein L36 [Streptococcus salivarius SK126], gi\|228250161... RL36_STREM - 50S ribosomal protein L36 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpmJ PE=3... RL36_STRU0 - 50S ribosomal protein L36 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpmJ PE=3 SV=1 RL36_STRPZ - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpmJ PE=3 SV=1 RL36_STRMU - 50S ribosomal protein L36 OS=Streptococcus mutans GN=rpmJ PE=3 SV=1 RL36_STRP3 - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=r... RL36_STRP8 - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=rpmJ PE=3 SV=1 RL36_STRPY - (P66303) 50S ribosomal protein L36 RL36_STRA3 - 50S ribosomal protein L36 OS=Streptococcus agalactiae serotype III GN=rpmJ PE=3 SV=1 RL36_STRA5 - 50S ribosomal protein L36 OS=Streptococcus agalactiae serotype V GN=rpmJ PE=3 SV=1 RL36_STRT1 - 50S ribosomal protein L36 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpmJ PE=3 SV=1 gi\|71909881, gi\|... - gi\|71909881\|ref\|YP_281431.1\| 50S ribosomal protein L36 [Streptococcus pyogenes MGAS5005], gi\|7185266... RL36_STRPM - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=rpmJ PE=3 SV=1 RL36_STRT2 - 50S ribosomal protein L36 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpmJ PE... RL36_STRS7 - 50S ribosomal protein L36 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpmJ PE=3 SV=1 RL36_STRP3 - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M3 GN=rpmJ PE=3 SV=1 RL36_STRPB - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpmJ PE=3 SV=1 RL36_STRP6 - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M6 GN=rpmJ PE=3 SV=1 RL36_STRPC - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpmJ PE=3 SV=1 RL36_STRP8 - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M18 GN=rpmJ PE=3 SV=1 RL36_STRPF - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpmJ PE=3 SV=1 RL36_STRTD - 50S ribosomal protein L36 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpmJ PE=3 S... RL36_STRP1 - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M1 GN=rpmJ PE=3 SV=1 RL36_STRPD - 50S ribosomal protein L36 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpmJ PE=3 SV=1	72.0	[0..1]	[38..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVRSSVKKM CEFCKTVKRR GRVYVICSSN PKHKQRQGFS SFAYEGITPS PLFAEPIASQ  60
   61 ELVRLPGQGV SAGLASLLHK RPMPTAYFGW RSGLASILFK QGN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.461	d.58.7	RNA-binding domain, RBD
View	Download	0.424	a.23.2	Diol dehydratase, gamma subunit
View	Download	0.424	a.23.2	Diol dehydratase, gamma subunit
View	Download	0.423	a.165.1	Myosin phosphatase inhibitor 17kDa protein, CPI-17
View	Download	0.420	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.402	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.343	d.189.1	PX domain
View	Download	0.328	d.58.28	Peptide methionine sulfoxide reductase
View	Download	0.324	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.314	a.165.1	Myosin phosphatase inhibitor 17kDa protein, CPI-17
View	Download	0.286	a.74.1	Cyclin-like
View	Download	0.201	d.20.1	UBC-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits