YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: FAX1_ARATH
Organism: Arabidopsis thaliana
Length: 226 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAX1_ARATH.

Description E-value Query
Range
Subject
Range
gi|6735307, gi|1... - gi|6735307|emb|CAB68134.1| hypothetical protein [Arabidopsis thaliana], pir||T45806 hypothetical pro...
301.0 [0..1] [226..1]

Back

Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP  60
   61 VVEKTSKPYS TVDETATNKE SITEPVEEDV A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQPIRAAKIH DFCFGIPYGG LVVSGGLLGF AFSRNLTSLS TGVLYGGGLL ALSTLSLKIW  60
   61 REGKSSFPYI LGQAVLSAVV FWKNFTAYSM TKKLFPAGVF AVISACMLCF YSYVVLSGGN 120
  121 PPPKKLKPSA TSPSY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.346787
Match: PF03647.4
Description: No description for PF03647.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle