YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CSTR5_ARATH
Organism: Arabidopsis thaliana
Length: 325 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSTR5_ARATH.

Description E-value Query
Range
Subject
Range
gi|109123815 - gi|109123815|ref|XP_001113968.1| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...
145.0 [0..5] [324..309]

Back

Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATANGAKSP SSMGPKVLFY SILLTLQYGA QPLISKRCIR KDVIVTSSVL TCEIVKVICA  60
   61 LILMARNG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [69-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLKGLAKEWT LMGSLTASGL PAAIYALQNS LLQISYRSLD SLTFSILNQT KIFFTAFFTF  60
   61 IILRQKQSIL QIGALCLLIM AAVLLSVGEG SNKDSSGINA D

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.09
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [170-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKLFYGIIPV LAASVLSGLA SSLCQWASQV KKHSSYLMTV EMSIVGSLCL LVSTLKSPDG  60
   61 EAIKKYGFFH GWTALTLVPV ISNALGGILV GLVTSHAGGV RKGFVIVSAL LVTALLQFAF 120
  121 EGKPPSSYCL VALPLVMSSI SMYQKYPYID KKKKKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle