YRC Public Data Repository - Protein Structure Prediction

Protein:	SAG21_ARATH
Organism:	Arabidopsis thaliana
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAG21_ARATH.

Description	E-value	Query Range	Subject Range
gi\|3193289, gi\|7... - pir\|\|T01312 hypothetical protein T14P8.2 - Arabidopsis thaliana, gi\|7268998\|emb\|CAB80731.1\| AT4g023...	140.0	[0..1]	[97..110]
gi\|7489163, gi\|2... - pir\|\|T01984 late-embryogenesis protein lea5 - common tobacco, gi\|2981167\|gb\|AAC06242.1\| late embryog...	134.0	[0..1]	[96..1]
gi\|1370589 - gi\|1370589\|emb\|CAA66948.1\| protein induced upon tuberization [Solanum demissum]	125.0	[0..1]	[96..1]
gi\|82623369 - gi\|82623369\|gb\|ABB87099.1\| unknown [Solanum tuberosum]	124.0	[0..1]	[96..1]
LEA5_CITSI - Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1	124.0	[0..1]	[96..1]
gi\|1172167, gi\|7... - pir\|\|T07161 late-embryogenesis protein homolog - tomato, gi\|170507\|gb\|AAA34193.1\| ORF, gi\|1172167\|g...	123.0	[0..1]	[96..1]
LEA5D_GOSHI - Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1	122.0	[0..1]	[96..1]
gi\|90404835, gi\|... - gi\|90404835\|gb\|ABD93883.1\| group 5 late embryogenesis abundant protein [Citrus unshiu], gi\|90404816\|...	122.0	[0..1]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSISNVKI VSAFVSRELS NAIFRRGYAA TAAQGSVSSG GRSGAVASAV MKKKGVEEST  60
   61 QKISWVPDPK TGYYRPETGS NEIDAAELRA ALLNNKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.920819
Match:	PF03242.4
Description:	No description for PF03242.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits