YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21592369, gi\|...
Organism:	Arabidopsis thaliana
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21592369, gi|....

Description	E-value	Query Range	Subject Range
gi\|7485503, gi\|4... - pir\|\|T06741 hypothetical protein F15B8.20 - Arabidopsis thaliana, gi\|4678268\|emb\|CAB41176.1\| putativ...	210.0	[0..1]	[114..501]
gi\|9858777 - gi\|9858777\|gb\|AAG01124.1\|AF273333_9 BAC19.9 [Lycopersicon esculentum]	179.0	[0..1]	[104..244]
gi\|49092662, gi\|... - gi\|67526395\|ref\|XP_661259.1\| hypothetical protein AN3655.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	141.0	[0..3]	[104..2]
gi\|115389562, gi... - gi\|115389562\|ref\|XP_001212286.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	129.0	[0..3]	[104..2]
gi\|220690652, gi... - gi\|238503898\|ref\|XP_002383181.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22... gi\|169764835 - gi\|169764835\|ref\|XP_001816889.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83764743 - gi\|83764743\|dbj\|BAE54887.1\| unnamed protein product [Aspergillus oryzae]	128.0	[0..3]	[104..2]
gi\|159125466 - gi\|159125466\|gb\|EDP50583.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|66849243, gi\|... - gi\|70993524\|ref\|XP_751609.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668492...	127.0	[0..3]	[104..2]
gi\|145013897, gi... - gi\|39968795\|ref\|XP_365788.1\| hypothetical protein MGG_02490 [Magnaporthe grisea 70-15], gb\|EAA54505....	126.0	[0..1]	[104..1]
gi\|215766064, gi... - gi\|215766064\|dbj\|BAG98292.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115479863\|ref... gi\|125564180 - gi\|125564180\|gb\|EAZ09560.1\| hypothetical protein OsI_31839 [Oryza sativa Indica Group]	125.0	[0..32]	[109..35]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTKPLIVA AKTLRNRIHF RSGSTSTGPS RWATPGHEER PKGYFMNRTP PPPGQSRKWE  60
   61 DWELPCYITS FLTIVILGVG LNAKPDLSIE TWAHQKALER LEMEKLASAG DSSG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.426	a.29.13	Description not found.
View	Download	0.357	a.24.26	Description not found.
View	Download	0.333	a.7.5	Tubulin chaperone cofactor A
View	Download	0.333	a.7.5	Tubulin chaperone cofactor A
View	Download	0.323	a.61.1	Retroviral matrix proteins
View	Download	0.323	a.29.13	Description not found.
View	Download	0.303	a.61.1	Retroviral matrix proteins
View	Download	0.262	a.7.5	Tubulin chaperone cofactor A
View	Download	0.262	a.7.5	Tubulin chaperone cofactor A
View	Download	0.251	a.48.1	N-terminal domain of cbl (N-cbl)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits